Antrostomus carolinensis (chuck-will's-widow): 104532224
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Entry
104532224 CDS
T08541
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104532224 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acar03400
]
104532224 (LIG4)
Enzymes [BR:
acar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104532224 (LIG4)
DNA repair and recombination proteins [BR:
acar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104532224 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
DUF2948
SKA1
Motif
Other DBs
NCBI-GeneID:
104532224
NCBI-ProteinID:
XP_010175669
UniProt:
A0A094K8H3
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASTPASQPSPKKTVASHVPFADLCCTLERIQTCKSRPEKTKYFKGFLDSWRKYHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDTGDFAMVAYFVVKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQTTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMNNQIFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHKVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMV
EDSDLQTCFCVFDVLMVNNQKLGHEVLSKRYEILSSVFTPETGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSNVSKV
SNVFEDVEFCVMTGTGKCSKSELESRIAEWGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKTLVPWQPTFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRIKDIRVMPLDMIAELEERYSWNSCQLSIFRGNTVYVDCYAVVNEPRTKIHGTTLS
VRALELRFYGAKVVSHIEEGISHVVIGEDHSRVKEVKALRRTFGKKFRIVSELWITESVE
EGVAKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacacctgcttcgcagccttctcctaaaaaaacggtggcttctcacgtgcct
tttgcagatctgtgttgtactctggagcgaatacagacgtgcaaatctcgtccggagaaa
accaagtatttcaagggttttctggattcctggagaaaatatcatgatgctcttcatcaa
aaagagaaggacgtcacagattctttttatccagccatgcgtcttattcttccacagttg
gaaagagaaaggatggcgtatggaattaaagaaactatgcttgcaaagctgtatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
actggctcacgtggagatactggagattttgcaatggttgcgtactttgtggtaaaacct
cggagcccaaaacaaggcagactgaccatagaacaagtcaatgaacacttggatgcaata
gctaataataatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggagcaaaaatggctcatccggatgattataaaggatctaaag
cttggtgttagtcaaacaactatattttccatttttcatcctgatgctgccgaattacac
aacgttacaactgatttggaaaaagtttgcagacaactgcatgatccctccgtctcactt
agtgatgtttctatcacgttgttttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagatattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggagatgtgtataaatatttttcccgaaatggg
tttgactatactcagcagtttggtgcttccccccttgatggctcattaacaccatttatt
cataaagtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatccagagacacaaacctttatgcaaaaaggaaatagatttgacataaaaagaatggtg
gaggattctgatctccagacgtgcttctgtgtgtttgatgtattgatggttaacaatcag
aagttgggtcatgaagtactaagcaaaagatacgaaatcttaagtagtgtatttacccca
gaaacgggcaggatacatgttgtacataaaaaaagtgccagaacgagaaaagaagtaatt
gatgctttgaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
agtggactgatggatgagctagaccttttgattgttggtggttactggggaaagggctca
cgtggtgggatgatgtctcattttctgtgcgctattgcagagacaccccctccaaatgaa
aaaccgaccgttttccactctatttgtcgtgttggctctggctacactatgaaggaactg
tatgatttaggtttgaaattggctaaacactggaagccctaccacaggaaggaccctcca
tgtaacattttgtgtggaactgaaaaaccggaaatgtatattgaaccttgcaactctgtc
atagttcagattaaggcagccgagattgtcgacagtgatatgtacaaaactgactgtact
ttgagatttccccgaattgagaagataagagaggacaaagaatggtatgagtgcatgact
tcagacatgttagaagatctcagaagcaaagcagaagggaagctggcatctaagcacctt
catatagatgagtatgatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgaag
aagataattggaatagctgagcaatttaaagctcctgatctttctaatgtaagcaaggtt
tcaaatgtgtttgaagatgttgagttttgtgttatgacaggaacagggaaatgctcaaag
tctgaactggaaagtagaatagctgaatggggcggcagcgttgtacagaacccagggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtcagggcagagtggctccttcagtgttttcaaactaaaacgctg
gtgccttggcaaccaacctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagctacacagcagacacagatgttgcacaactcaag
gaagtgttctcaagaataaaagacattagggtgatgcctttggacatgattgcagagtta
gaagaacgttattcatggaacagttgtcagctcagtatattcagaggaaacactgtttac
gtggactgttatgctgttgttaatgagcccagaaccaaaatccatggaacgacactgtca
gttagagctttggagctccgtttttatggtgcaaaagtagtgtctcacattgaagagggc
atctcccatgttgttataggagaagatcattcccgggtgaaagaggtgaaagcactcagg
agaacatttggtaaaaaatttagaattgtatctgagctgtggataacagagtcagtggag
gaaggagtcgcaaagaatgaaaatcagtacctaatttaa
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