Arcanobacterium canis: P7079_01400
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Entry
P7079_01400 CDS
T09058
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acas
Arcanobacterium canis
Pathway
acas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P7079_01400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acas03400
]
P7079_01400 (mfd)
Enzymes [BR:
acas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P7079_01400 (mfd)
DNA repair and recombination proteins [BR:
acas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P7079_01400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WFM83664
LinkDB
All DBs
Position
327087..330590
Genome browser
AA seq
1167 aa
AA seq
DB search
MDLRPLLPLVTCDELEAADTQKTLDIAAPRGAAAPVLASVANPQRLEVVVTASGRDAEEL
ARALSAFAPADSIDIFPAWETLPHERLSPRADTVANRLRVLRRLAHPDEFAPLQFLLVPI
RALLQPIAQGLGDLEPVRMSVGDFADLESVTKALVAAAYSRVDMVESRGEFAVRGDILDV
FPPTERHPLRVEFFGDEVEEIRQFSVADQRSTDNVDKLYAPPCREILLTTDVRERALSAI
PQLPGATDMLERIANGIAVEGMESLAPVLLDRLVPVVSQLPPASRITLVETERIAARAES
LIETTHEFLAAAWSSAAAGGSVPIQVDEASFSTIEVTRERARRGGHAWWTLGGFATDSSL
ELGLREPQKFAGKVDDAVASLGNLVRSGFTIVLTVEGAGLGKRLVDVMSDADVPARICDS
LDTPPTPGIVHIVTAPIATGFINDRSRLAVVGAQDLLGRVRSAAAQERKMPKRRKNAVDP
LALKPGDYVVHERHGVAQFVKMAKRSLGGPGGTQREYVVLEYASSKRGAPRDQLWVPTDQ
LDQVTRYAGGDSPSLNKMGGADWAKTKAKAKAAIRSIAKELVRLYAQRRATKGHAFAPDT
PWQHELEDAFEFVETPDQLSTIEDVKRDMESPEPMDRLISGDVGYGKTEIAIRAAFKAVQ
DGMQVAVLVPTTLLVQQHLETFQERYAGFPVKVAGLSRFQSEKESEEVKNGIRNGTIDVV
VGTHRLITGDVRFKNLGLVVIDEEQRFGVEHKEALKQLYPTIDVLSMSATPIPRTLEMAV
TGLRQMSQLATPPEERHPILTYVGREENKQIAAAIKRELLRDGQVFFIHNRTSTINKKAA
ALAELVPEARVGVAHGKMSEHQLESVIQQFWDQEIDVLVCTTIVETGLDIPKANTLIVED
SQKLGLSQLHQLRGRVGRGRERAYAYFLYPPDKAMTETAIERLRTIAQHTELGAGFQVAL
KDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMVGEAVAEITGQAPAEEERNREVRIELPID
AYVPQEWISSERLRLEVYQKIAGARGDSQRADVQTELVDRYGEIPVQVERLFAIARLRDL
ARSVGLEEITVMGRNARFAPVQLPDSRQARLKRLYPRAISKPATRVLLVPLPDDAGARLG
AVAAVENEEIVEFVRTVISQILVVNGS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcgtccacttttgcctctcgtcacctgtgatgagttggaggctgccgacacc
caaaaaacactcgacatcgctgctccgcgtggcgctgctgcgccggttctggcgtcggtc
gcgaacccgcagcggctcgaagttgtagtgacggcgtcgggacgcgacgccgaagaactt
gcgcgcgcactgagcgcctttgcgccggctgactccatcgatattttcccagcgtgggaa
accctcccacacgaacgtctctcaccgcgcgcagacaccgtggcaaatcgactgcgtgtg
ttacgccgtcttgcgcatcccgacgagtttgcgccgttgcaattcctccttgtgccaatt
cgagccttgctacagccaatcgcccaaggtctgggcgatcttgaacccgtgcgcatgagc
gtgggcgatttcgcagatttagagagcgtgacgaaagcgctggttgcggcagcatactca
cgtgtggatatggtcgaatcacgcggagaatttgcagttcgcggagacattttggacgtt
ttcccgcccacggagcgtcaccccttgcgcgtggaatttttcggtgatgaagtcgaagag
attcgccagttctcggtggcagaccagcgctcgacagacaacgttgacaaactttacgca
cctccgtgccgcgaaattctgctcactactgatgtgcgcgaacgcgcactgtctgcgatt
ccccagcttccaggggcgacggatatgctcgaacggattgcgaacggaatcgcagtcgaa
ggaatggaatcgctcgcaccagtgctccttgatcgccttgttccggtggtcagccagctc
ccacccgccagccgtattaccctggtagagacggaaaggattgcggcgcgagccgaatca
ttgattgaaacaacacatgagtttcttgcagccgcgtggagttctgcagctgccggtgga
agtgtgccaattcaggtggatgaggcatcgttttccacaatcgaggtcacccgtgagcgg
gcacgtcgaggtggacatgcgtggtggacactgggaggctttgccacggattcgtccctt
gaactcgggcttcgcgaaccgcaaaaattcgcaggaaaagttgacgacgccgtcgcgtct
ctcggcaaccttgtacgttccggtttcacgattgtgctcacggtcgagggcgcgggcctc
ggtaagcgcctcgtggacgtcatgtccgacgccgatgttccagcacgaatttgtgacagt
ctcgatacccctccaactccggggatcgtccatatcgtgactgctccgattgcgacgggc
ttcatcaacgatcgatcacgcctcgccgtcgtcggcgcgcaagatctgcttggccgtgtg
cgttctgccgccgcgcaagaaagaaaaatgcccaagcgcaggaagaacgccgtcgatcca
ttggcgctcaagcccggggattacgttgttcatgaacgtcatggtgtggcacagttcgtc
aaaatggctaagcgcagccttggggggccaggaggaacccaacgcgaatatgtcgtgctc
gaatatgcttcgtcaaagcgcggtgcgccacgcgatcagctctgggttccaaccgatcaa
ctcgatcaggtcacgcgttatgcgggcggagattctccgtcgttgaataagatgggcggc
gcggactgggccaaaacaaaagcgaaggccaaggctgcgattcgatcgatcgctaaagag
ctggtccgcttgtacgcgcagcgtcgggcaacgaagggccatgcgtttgcgccagataca
ccgtggcagcatgagcttgaggatgcctttgaatttgttgaaactcccgatcaactttcg
acaatcgaagacgtcaagcgtgacatggaatcgcctgaaccaatggatcgcctcatttcg
ggcgatgttggctacggaaaaactgaaattgcgattcgtgcagctttcaaagcggttcaa
gatggtatgcaagttgcagtgctcgtgccaacaacacttcttgttcaacagcacctcgaa
actttccaagagcgttatgctggtttcccagtgaaggtggccgggctttcccgattccaa
tcggagaaggaatctgaggaagtcaagaacgggatccgcaacggcacaatcgatgtcgtg
gtgggaacgcatcgcctgattacaggggacgtgcgctttaagaaccttggacttgtggta
atcgacgaagagcaacgctttggcgtcgagcataaggaagcgctcaagcagctttatccc
acaatcgacgttctatcaatgagtgccaccccgatcccgcgcaccctagagatggccgtg
accggtttgcgccaaatgagccagcttgccacgccacccgaggaacgccacccgatcttg
acctacgtcggcagggaagaaaacaagcagattgcagctgcgattaaacgcgagcttctg
cgagatggccaagtgttcttcattcacaatcgcacttcgacgatcaataaaaaggcggcg
gctcttgccgaactcgtcccggaggcccgcgtcggcgtcgctcacggcaagatgagtgag
catcagcttgaaagcgtgattcagcagttctgggatcaagagattgacgtgcttgtgtgt
accacaattgtggagaccggcctggacatccccaaggcaaataccttgatcgtggaagat
tcccagaagcttggtctttcccagttgcatcagttgcgtgggcgcgtgggccgcgggcgg
gagcgtgcatacgcctacttcctctatccgccagataaagcgatgacggagacggcgatt
gaacgtctgcgtacgattgcccagcacacagaattgggtgccgggttccaagtggcgctg
aaggatctcgaaattcgcggcgcaggtaatttgttgggcggggagcaaagtggccatatc
gcaggtgtcggcttcgatttgtacctgcgaatggttggcgaagccgttgccgagattact
ggccaggcccccgctgaggaggagcgcaatcgcgaagtgcgcatcgaattgcccattgac
gcctacgtgccgcaagagtggatttcttccgaacgtcttcgcttggaggtgtatcagaag
atcgctggcgctcgtggagattctcaacgtgccgatgttcaaaccgaattggttgatcgt
tatggtgagatccccgtgcaggttgagcgattgtttgcgatcgcacgtctgcgcgatctt
gcgcgtagtgtcgggctagaggagatcaccgtcatggggcgcaacgcgcgtttcgctccg
gtgcagcttcctgattcacgtcaagcacggctcaagcgcctttaccctcgggcgatttcg
aagccggcgactcgcgttctccttgttcctcttcccgacgatgccggggcgcgcttgggt
gcggtagcggcagttgaaaacgaagagatcgtggaatttgtgcggacagttatttcacag
attctggtagtgaacgggtcgtaa
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