Acinetobacter pittii: BDGL_000994
Help
Entry
BDGL_000994 CDS
T01684
Symbol
mfd
Name
(RefSeq) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acc
Acinetobacter pittii
Pathway
acc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BDGL_000994 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acc03400
]
BDGL_000994 (mfd)
Enzymes [BR:
acc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDGL_000994 (mfd)
DNA repair and recombination proteins [BR:
acc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BDGL_000994 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-GeneID:
11639175
NCBI-ProteinID:
YP_004995262
UniProt:
F0KMX8
LinkDB
All DBs
Position
1042886..1046347
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLFKEIAVQHSSLLVVVARNNQHVAQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGVLLVSASTLAQRVAPY
SWVLGEHFDIRVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQDAPI
RIDLFDDEIDTLKFFDPETQRTTTTLKSFTVLPAKEFPLKEARSIFRDRYSELFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDKTYMQSQSTLTTYFPKNCIVITNNDIDTDLTSFW
KEVFRRYEDRRHNADQPILPPDELFIAPNNLLSALNQFPRMLVSAEAVEEKVGALNLKVE
QPPKLPVDPKKDKPFAVVKKYIDEANHPVLLVAESAGRRESLRDGLRASLGDIPSVDSFE
QFQKSQFAIAITNAPLDRGLLLTDQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEEAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFGFEVDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTEASIKEAILRELLRGGQVYFLHNEVDTIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDE
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGVPPQSVKHLFSVHQIRLKAEQLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKHPTYYRMEGGQRLKVMVQLEEQEKRIQFI
NDLLAKLLNELHA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttacaacagctcaaagccggtgaaaagcgt
tgggtagggtcgttattaggttcatctgctgcattattattcaaagaaattgccgttcag
cattcatctttgcttgttgtagtagctcgaaataatcaacatgttgctcagttagaaagt
gaacttgaattttatggcataaaaccgacaattttccctgattgggaaattttgccgtat
gaccgcttgtcaccccatcaagatattgtttcagaacgactcgcgattttatccaatatg
ccgcaaaaaggtgtattgctcgtttcagcaagcactttagctcaaagagttgcaccatat
tcttgggttttaggtgagcattttgatatacgtgtggggcaaaaatttgatttagaacaa
cagaagctacggttagtacaagctgggtatcatttagtagatacggtttatgaccatggt
gagtttgctgtacgtggtagcattatggatatttttgcatctggtcaggatgcacctatc
cgtattgacctgtttgatgatgaaattgatactttaaaattctttgatccagaaacgcaa
agaacaacaactactttaaaaagttttaccgtcttaccagcaaaagagttcccattaaaa
gaagctcgttcaatttttagagaccgttattctgaactttttccgactgcaaatcctaag
aaaaacccaatttaccaagatgttcttgatggaattgcatctccgggaattgagttttat
ttaccgttattttttgataaaacttacatgcaatctcaaagtacactcacaacgtacttt
ccaaagaattgcattgtaattacaaataatgatattgatactgatttaaccagtttttgg
aaagaagttttccgtcgctatgaagatagacgtcataacgcagaccagccaattctccca
cctgatgagttatttattgcaccaaataacttactaagtgctttaaatcagttcccacgt
atgcttgtgagcgctgaagcagttgaagaaaaagttggggctctaaatcttaaggttgag
caaccacctaagttgccagttgatccgaaaaaagacaaaccatttgccgtagttaaaaaa
tatattgatgaagcaaatcatcctgttttattggttgcagaaagtgctggtcgacgagaa
agtttaagagatggtttgcgtgccagtctgggagatattcctagtgtagatagttttgag
caattccagaaaagtcagtttgcgattgcgattacgaatgcgccattagaccgtggtttg
cttttaaccgatcaattgtctgttatttcagaaaatcagttatatgagcatcgggtggtc
caacgtcgtcgtaaacgtcagcaagaagtttcagaagagttcctaatacgtagtttgacc
gaattaagcataggtgctcctgttgttcatattgaccatggtgtagggcgttacgctgga
ttaattactttggcaattgaagggcaagattatgagttcttgcaactagactatgctgaa
gaggcaaaagtttacgtgcctgtgactaacttgcatctcattagtcgctatagtggcgga
gatccagatttagcaccattacataaaattggaactgacgcgtggagtaaggctaaacgt
aaagctttagaacaaattcatgatgttgcagcagagttgctacatatacaagcacgtcgt
cagtcaaaacctggctttggttttgaagtcgatcagtcactttatatgcaatttgcgagt
ggatttgcgtatgaagaaacacttgatcaagccaatgctattgaagcgacactttatgat
atgcaacaagctaaaccgatggatcgacttgtttgtggggacgttggttttggtaaaaca
gaagttgcaatgcgagcagcatttgttgcggtgcaaaatggcaaacaggtcgctgtttta
gtaccgacgacattgcttgctcaacagcattatgagtcttttaaagaccgctttgctgac
tggcctgttcgtattgaagtattatcacgctttggttcaaataaaacgcatacaaaaaat
attgaagatcttgctgaaggtaaagtcgatattgtggtgggcacccataaacttttacaa
gaaaatgtgcagtttaaagatctaggcttaatggtggtcgacgaagaacaccgttttggg
gtacgtgataaagagcgtattaaagcattacgtgcagatgtagatatgttaacgcttaca
gctacaccaattcctcgtacgcttaatatggctttttcgggaatgcgcgatttatctatc
attgctacaccgccagcccgtcgtttagctgttaaaacctttgtacaagaacataccgaa
gcgtctattaaagaggcgatcttgcgtgaattactacgtggtggccaagtatatttcttg
cacaatgaagttgatacgattgagagagcagctgaaaatattcgtgtgcttgttcctgaa
gctcgtgtagcagtagctcatgggcaaatgagggaaagagaacttgagcaagtcatgcaa
cagttctaccacaaagaatacaatgtattggtatgttcaaccattattgaaactggaatt
gatgttccaaatgccaacactattttaatagaaagggctgacaaacttggtttagctcaa
ttacaccaattacgtggccgtgtaggacgttcacaccaccaagcttatgcctacttattg
gttccttccataaagcatttaaaaggtgatgccgaaaaacgtctagatgcaattcaacgt
gcttcaactcttggtgctggtttcatgctggctacagaagatttagaaattcgaggtgcc
ggtgagcttttaggtgaacagcaaagtggttcaatgcaggcaattggatatagcctatat
atggaaatgctggaaaaagctactaaagcgattcagcaagggaaaacgccgaattttgat
gcacctttatcattaacagcagaaattaatttacacattcctgcactgattccagatgag
tatttaggtgacgtacatcagcgtttattattctataagcgtattagtaatacagatacc
caagaaaagctcgacaatatacgtatggagctgattgaccgttttggggttccaccgcaa
tcagttaaacacttatttagtgttcaccaaattcgcctgaaagctgaacagttaggtatt
actaaaatcgatattaatactcaaggtggcaatattgaattctcgcctgatacacctgtt
caggccatcagtattattcaactcatgcaaaagcatccaacctattatcgtatggaaggt
ggtcaacgtttaaaggttatggttcagcttgaagagcaggaaaaacgaatccaatttatt
aatgatttattagcgaaattattgaatgaattacatgcttaa
DBGET
integrated database retrieval system
