Anaerocolumna cellulosilytica: acsn021_17650
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Entry
acsn021_17650 CDS
T06764
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acel
Anaerocolumna cellulosilytica
Pathway
acel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
acsn021_17650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acel03400
]
acsn021_17650
Enzymes [BR:
acel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
acsn021_17650
DNA repair and recombination proteins [BR:
acel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
acsn021_17650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCJ94196
UniProt:
A0A6S6QWU5
LinkDB
All DBs
Position
2103941..2106241
Genome browser
AA seq
766 aa
AA seq
DB search
MRLEWEGVLLSWAVPKGPSYDTHDKRLAVKVEEHPLEYRNFEGTIPKGEYGGGVVMLWDE
GYWEPYKNVDEGLFKGELKFVLKGRRLRGKWALVRWKAKDGELKDNWLLLKEKDEYVKTT
NGITEFTTSIRTGRTMAEIDAGKEDKITRNPFENTDVQLAKLVNKVPEGEDWLYELKYDG
YRILSYVECSSARLITRNGNDYTRRFHKIASSLIDFAGGRAMVLDGEMAITDASGKTDFQ
ALQNYMKNPKAKNLTYIVFDLLALDGKDLREQPLIKRKEKLKALLKDAPKCIYYSRYVRG
SGKESFVVACEAGMEGIVGKKADSIYSGTRNGDWIKLKCDKRQEFVIGGYTLSDKKVSGV
SSLLLGVYEGSDFVYAGRAGTGLSESDIVLLEKKFANIIRADAPFKAPPKSKSNEKITWL
EPDLVAEIKYAEWTEENLLRQASFKGIRTDKNPRDVKREKEEEEIVTPSEMVHEKLAETN
KNSIIVNSIKISNPDKVLFHEPEITKGDIVNYYEKVSERMLPYLSNRILSVVRCPKGISQ
TCFFKKHPAADSKEVCTISIINKNGEAEEYFYIENTTGIIYQVQMGTLEFHTWGSCVDEI
EKPNMMVFDLDPDEGMELDRVRQGVLDIKSILNELSLKSYLKTSGGKGYHIVVPLIPSVG
WTVFHDFSRGVAAVMEQKWPDRYTSNVRKAKRTGKIFIDWIRNGRGATSIAPYSIRARKG
ARVSMPIGWDELDRIAPDSIDMAEAVRRMNGGDPWADFLKSNQMLK
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtctggaatgggagggagtacttttaagctgggcggttcctaaggggccatcctat
gatactcatgacaaaaggttagctgttaaggtagaagaacaccccctggaataccggaat
tttgagggaactattccgaagggagaatacgggggcggagtagttatgctttgggatgag
ggatactgggaaccatataaaaatgtggatgaaggactttttaaaggtgagttgaagttt
gttctgaaaggaaggcggcttaggggaaagtgggctttggtcaggtggaaagcaaaagac
ggagagttaaaggataattggcttttactgaaagagaaggatgaatatgttaaaacaacc
aatggcataactgagtttacgactagtatccggactggtcgtactatggcggaaatcgac
gcagggaaagaggataagattacgagaaacccctttgaaaatacagatgtacagcttgca
aaattagttaataaggttcctgagggagaggattggctctatgagttaaaatatgacggt
tacagaatcttgtcatatgtagaatgcagcagtgcacgtttgataacaaggaatgggaat
gattatacaaggcggtttcataaaattgcttcatctcttattgattttgcaggaggaagg
gcaatggtgttggatggtgagatggcaattacggatgcttcgggtaagacggattttcag
gctctgcaaaactacatgaaaaatccaaaggctaaaaacctaacctatattgtttttgat
cttcttgcactggatggaaaggacttaagagaacaacctttaattaaaagaaaagagaag
ctaaaagctttgttaaaggatgcaccaaaatgcatttactatagccgttatgttagagga
agcggtaaggaaagttttgttgtagcttgtgaggcaggtatggaagggatagtggggaaa
aaagcggattccatctacagcggaacaagaaacggtgactggataaagttaaaatgtgat
aagagacaggaattcgttatcggaggatatacactctccgacaaaaaggtaagtggagta
agttctcttcttctcggtgtttatgaaggtagtgattttgtttatgccgggcgtgcaggc
accggcttaagtgaatcagatatagtactgcttgaaaaaaaatttgcgaatattataaga
gcagacgctccttttaaagccccgccaaagtctaaatcaaatgaaaaaattacgtggctt
gaacccgacctggtggcagaaatcaaatatgccgaatggacggaagagaatttgttaagg
caggcaagctttaaaggaatccgtacagataagaaccctagagatgtaaaaagggaaaaa
gaggaggaagaaatcgtgacaccgagtgaaatggttcatgagaagcttgcagaaacaaat
aagaactccataattgtaaacagtataaagataagcaatccggacaaagtattatttcat
gaacctgagattacaaaaggagatattgtaaattactatgaaaaggtttcagagagaatg
ctcccgtatctaagtaatcgaatcttaagtgttgtccgttgtccaaaaggaatctcccaa
acatgtttttttaaaaagcatccggcagcggatagcaaagaggtttgtactatttcaatc
atcaataaaaatggtgaagcagaagaatacttctatattgagaatacaaccggaatcatt
tatcaagtacagatgggaactttagaattccatacttggggaagttgtgttgatgaaatt
gagaagccaaatatgatggtatttgacctggatccggatgagggaatggagcttgatagg
gtgcgtcagggtgtattggatatcaaaagtattcttaacgaactttccttaaagtcatac
ctaaagaccagcggaggaaaaggctatcatatagtggttccgttaataccatctgtgggt
tggactgtgtttcatgatttttcaagaggagtggctgctgttatggagcaaaagtggcct
gaccgctatacaagtaatgtgagaaaggcaaagcgaaccggaaagatttttattgactgg
ataagaaacggcagaggagcaacaagtatagctccttattctataagggctagaaaggga
gcaagggtatcaatgcccattggatgggatgagttagatagaattgctcctgatagtatt
gatatggccgaagcagtcagaagaatgaatggcggagatccatgggcggattttttaaag
agtaatcagatgcttaaatag
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