Acetobacter sp. JWB: DS739_05195
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Entry
DS739_05195 CDS
T05544
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
acet
Acetobacter sp. JWB
Brite
KEGG Orthology (KO) [BR:
acet00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DS739_05195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acet03021
]
DS739_05195
Transcription machinery [BR:
acet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DS739_05195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AXC26239
LinkDB
All DBs
Position
1080594..1082585
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AA seq
663 aa
AA seq
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MATKTASTNAAQEQDGDTTLLDTRSSAVKKLIAKGRERGCITFDELNAVLPQDKMSSEQI
EDIMAVLSEMGIQVVENEDNDNEEAEPKKAAAESEDADAEEEAETEAEAESPTGNVNAES
VGRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHEM
IRNNEMLLRDIVDLEAMQSGGNPLEEGGDGTFNEAESDSDSEEAEEPETEGEGDIESEGS
GLSLSALEEKLKPEILAHFDEIEPLYAALRKLQVQRIEALTSGEDVDGNFEENYVALREK
LVGKVEQVHLHNNRIEDLVAQLKQMFQKLNMLEGRMLRLAESCRVSREDFLLKYRGRELD
PGWMDMVSALSGRSWKNFVAKHANTVVDLRDQVAQLAQETGLPIGEFRRVYATVARGERD
SARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPL
EKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAIIPLDAAIQTNLREATTRVLASL
TPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFL
DDN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaaacggcatcaaccaacgcagcgcaggaacaggatggggataccaccctg
cttgatacgcggtcttctgcagtcaaaaaactgattgccaaagggcgtgagcgcgggtgc
attacgtttgatgagctgaatgccgttctcccgcaggacaagatgtcttctgaacagatt
gaagacattatggctgtgctgtctgaaatgggtattcaggttgtcgaaaacgaagataac
gacaacgaagaagctgaacccaaaaaagccgccgctgaaagcgaagatgcagatgcggag
gaagaggctgagaccgaagctgaagccgaaagcccaaccggcaatgtaaatgctgaaagc
gtaggccgcacggatgacccggtgcggatgtatctgcgcgaaatgggcacggtggaactg
ctctcccgcgagggcgaaattgctattgccaagcggattgaggctggccgcgatgaaatg
attggcggcttgtgtgaaagcccgctgacattccgcgccatcatctcctggcatgagatg
atccgtaacaatgaaatgctgctgcgtgacattgtggatctggaagccatgcaaagcggg
ggcaacccgctagaagaaggcggagacggcacgtttaacgaagccgaatccgattcggac
tcggaagaggcagaagagccagaaaccgagggcgagggtgatattgaaagcgaaggcagc
ggcctttccctttctgcgctggaagaaaagcttaagccggagattctggcgcattttgat
gagatcgaaccgctttatgcagctctgcgtaagttgcaggttcaacggattgaagccctg
acatctggtgaagatgttgatgggaattttgaagaaaactacgttgccctgcgtgaaaaa
ctggtgggcaaggtagagcaggtacacctgcacaataaccggattgaagatctggttgcc
cagcttaaacagatgttccagaagctaaacatgctggaagggcgcatgctgcgtctggca
gaaagctgccgtgtctcgcgtgaagatttcttgctgaaataccgtgggcgtgagcttgat
ccgggctggatggatatggtttccgccctgtctggtcgttcatggaaaaactttgtggcc
aagcacgccaacacagtggttgacctgcgtgatcaggttgcgcaactggcgcaggaaacg
ggtttgccgattggtgaattccgccgtgtgtatgcaacggttgcacgtggtgagcgtgat
tctgcccgcgctaaaaaggaaatgatcgaagctaacctgcggctggttatttccattgcc
aaaaaatacaccaaccgcggccttcagttccttgatctgattcaggaaggcaatatcggc
ttgatgaaggcggtggataagtttgaataccgccgtggctacaagttctctacttatgca
acgtggtggatcaggcaggctattacgcgctccattgcggatcaggcgcgtaccatccgt
attcctgtgcatatgatcgaaacgatcaacaaactggtgcgtacatcccgccagatgctg
catgaaatcgggcgtgaacctgctccggaagaactggctgaaaagctgggtatgccgctg
gaaaaagtgcgcaaggtgctaaaaattgccaaggagcccatctccctcgaaaccccgatt
ggggatgaggaagatagccatcttggtgattttatcgaggataaaacggctattatcccg
ctggatgctgctatccagaccaacctgcgtgaggccacaacccgcgttctggcctctctc
accccgcgtgaagaacgcgtgctgcgtatgcgctttggtatcggcatgaacaccgatcac
acgctggaagaagttggccagcagtttaacgtgacgcgtgaacgtatccgccagattgaa
gccaaggccctgcgtaagcttaaacatccaagccgtagccgtaagctgcgttccttcttg
gatgataactga
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