Pseudarthrobacter chlorophenolicus: Achl_0520
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Entry
Achl_0520 CDS
T00834
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ach
Pseudarthrobacter chlorophenolicus
Pathway
ach03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ach00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Achl_0520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ach03400
]
Achl_0520
Enzymes [BR:
ach01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Achl_0520
DNA repair and recombination proteins [BR:
ach03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Achl_0520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
DUF4434
Motif
Other DBs
NCBI-ProteinID:
ACL38519
UniProt:
B8HAQ8
LinkDB
All DBs
Position
complement(558520..561006)
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AA seq
828 aa
AA seq
DB search
MAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLIPAAANRPATRKRWVNGVGTAEK
PGEVFFQKNLEDSAPDWLPRAAITHKDRTIHYPMVNDPAVLTWFGQINSLEIHVPQWRVD
SQGTQLNPDRLVLDLDPGEGAGLADCREVALLARAILQDVGLAPVPVTSGSKGIHLYAPL
DGTQTSDQISEFARELARALESDHPDLAVSDMKKTLRKGKVLVDWSQNNAAKTTIVPYSL
RGRPTPMVAAPRTWREISSPRLKHLDYQEVLRRVQDGKDPFAAVVRAAGTLDDGDGGTGT
AQDGTHDGHPRLAKYRAMRDPKATPEPFSGAPRGGDAFVIQEHHASRLHWDLRLEHEGVL
ASWALPKGVPESGGKNHLAVQTEDHPMDYLTFHGTIPKGEYGAGDMTIWDTGTYELHKWI
NGKEVIVTLTGSEGGGLGGTRKVALIHTGRGQGSDAEKQWLIHLMDKEDQGARRRHAPSS
AEPAGSAEDVGSAGKSGDASNEQAGAKQVSPDDVRPMMATAGVPSDLLGSDWQVELKWDG
VRAILVADESSVRIFSRNGNDVTRTYPELTDRRCWPEQPFVADGEIIAVGPSGRPDFGLL
QGRMKLTRAADVVKAQKALPVRLMLFDLLHDGGTDLRRLPLRARRQRLEQFFQPSDCPVE
LSMVLEDPVEHIMDSARELGLEGVMAKRTDSRYVSGQRTRTWIKLKTERTQEVVVGGWRP
GKGGRQETVGSLLVGIPDGNKLQYVGRVGSGFSGRELAELRQTVEQLARKTSPFHEVPRP
DSADAHWVTPQLVGEVTYGEWTGPGRLRHPRWRGWRLDKDPSEVVRED
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
gtggccgggcgcgagctgacgctgaccaacctggacaaaatcatctacccggaaaccggc
accaccaaggccgatgtgctggcctactacgccgccgtggcccatgtccttattcccgcc
gcagccaaccggccagccacccggaaacgctgggtgaacggagtgggcaccgcggagaag
cccggcgaggtcttcttccaaaagaacctggaggactccgctcccgactggcttccccgc
gccgccatcacccacaaggaccggaccatccactacccgatggtcaacgatcccgccgtc
ctcacctggttcgggcagatcaattccctcgaaatccacgttccccagtggcgggtggat
tcccagggcacccagctgaacccggaccggctggtccttgacctggaccccggcgagggc
gccggcctcgccgattgccgtgaagtggcgctgctggcccgcgccatcctgcaggacgtg
ggcctggccccggtccccgtcaccagcggcagcaagggaatccacctgtacgcgcccctg
gacggcacgcagacctcggaccagatctccgagttcgcccgggaactggcacgagccctg
gaatccgaccacccggacctcgccgtcagcgacatgaagaagaccctccgcaagggcaag
gtgctggtggactggagccagaacaacgccgcgaaaaccaccatcgtgccctattccctg
cgcggccggcccacccccatggtcgcggcgccgcggacgtggcgggagatcagctccccc
aggctcaagcacctcgactaccaggaggtgctgcgtcgggtgcaggacggcaaggacccg
ttcgccgccgtcgtccgtgctgccggaacgcttgacgacggcgatggcggcacgggcaca
gcgcaggacggcacccacgacgggcatccccgactggcgaagtaccgtgcgatgcgcgat
cccaaggccacgcctgagccgttcagtggcgcaccgcgcggcggcgacgcgttcgtgatc
caggaacaccacgccagccgcctgcactgggacctcaggctggagcacgagggcgtcctg
gcatcctgggcgctccccaaaggtgtgccggagtcgggcggcaagaaccacctggccgtc
cagaccgaggaccaccccatggactacctcaccttccacggcaccatccccaagggtgaa
tacggcgccggcgacatgaccatctgggacaccggaacgtatgagctgcacaagtggatc
aacggcaaggaagtaatcgtcaccctcaccggctcagagggcggcgggctgggcggcacc
aggaaggtggccctcatccataccggccgcggccagggcagcgatgccgaaaagcagtgg
ctgatccacctgatggacaaggaggaccagggcgcacgacggcggcacgccccttcgtct
gcggagcctgcggggagtgccgaggacgtgggcagtgccgggaaatccggggacgcatca
aacgaacaggccggcgccaagcaggtttcccccgacgatgtccgccccatgatggccacc
gcgggagtcccctcagacctcctgggcagcgactggcaggttgaactcaaatgggacgga
gtgcgcgccatccttgtggcggatgagtcctcggtccgcattttcagccgcaacggcaac
gacgtcaccaggacctaccccgagctgacggaccggcggtgctggccggagcagccgttc
gtggccgatggtgagatcatcgccgtcggcccctccggcaggccggacttcggcctgctg
cagggcaggatgaaactcacccgcgccgccgacgtcgtcaaagcgcagaaggccttaccc
gtccggctgatgctcttcgacctcctgcacgacggcggcacggacctccggcgcctcccg
ctcagggcgcggcgccaacggcttgaacagttcttccagccctccgactgccctgtggaa
ctgtcaatggtgctcgaggatccggtggaacacatcatggacagcgcacgggagctgggg
ctcgagggcgtgatggccaagcgcacggacagccgctacgtcagcggccagcggacgcga
acctggatcaaactcaagaccgaacgcacccaggaagtggtggtgggcggctggcggccg
ggcaagggcggccgccaggaaaccgtgggatccctgctggtaggtattccggacgggaac
aaactccagtacgtgggccgggtgggcagcggcttcagcggccgcgaactggccgaactg
cggcagaccgtggagcagcttgcccggaagacctcgccgttccacgaggttcccaggcct
gactccgcggatgcgcactgggtcacaccccaactcgtgggtgaggtcacgtacggggag
tggactggcccggggcggttgcggcatccccggtggcggggctggcgcctggacaaggac
ccgtcagaggtggtccgggaggattga
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