Achromobacter sp. B7: DVB37_05665
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Entry
DVB37_05665 CDS
T05703
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
achb
Achromobacter sp. B7
Pathway
achb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
achb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVB37_05665 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
achb03400
]
DVB37_05665 (mfd)
Enzymes [BR:
achb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVB37_05665 (mfd)
DNA repair and recombination proteins [BR:
achb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DVB37_05665 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_30
HemY_N
Motif
Other DBs
NCBI-ProteinID:
AYD67482
LinkDB
All DBs
Position
complement(1263394..1266858)
Genome browser
AA seq
1154 aa
AA seq
DB search
MPTATSPVTAAPPVPATAPTLSALKPGARYAQPRPPGSGDAWLLADLARQAQAPLVILTA
EPVEAQRLAEEIQLFAPDLRVRQLPDWETLPYDAFSPHQDLISQRLHTLHSLMMKTVDVL
TVPITTALYRLAPPSFLAAYTFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPGEFCLRG
GLIDLFPMGSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMDEDSRTR
FRARFREVFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFEETATLFDYLTTGTVTVTVGD
IDDAIQRFNQDTSSRYGFLKSDRERPVLPPSALFLDSETLYTRLKEFRRLSLTAGDPHPD
FRAVPDVSVARRSDDPIAKLRALVQTRQTRVLLCADSAGRRETLVQMLNEFGVTPDAQPD
TIEAFLASDANFGIVAAPLATGFGLPQANLAFLTENDLYPGHAGTGRRGKRDQERASNVE
AMVRDLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYANGSTLYVPVSQLHV
IARYSGADPDAAPLHQLGSGQWDKARRKAAKQVRDTAAELLALYAQRAAREGFAFNLPLN
DYQAFAEGFGFEETVDQAAAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVAN
GKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSGKEVAAAVEGINDGRVDIVI
GTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLE
GIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETIHNRRAR
LEELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANTIVIHRA
DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITTNAKKRLEAIQAMEELGSGFYLAMH
DLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRVGEEPDLDAPFNLACEVNLHA
PALLPSDYCADVHARLGIYKRLAHAADEDDLIHIQEELIDRFGKLPEAAQTLLTTHRLRL
AAQPLGIVKIDASETQALIQFGPKTSVDPARIIELVQRQRNIKLAGQDKLRVEIKAAQIP
ARSDAIRAVLRALK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgccacttcccccgtcaccgccgcgccgcccgtccccgcgaccgcccctact
ttgtccgcgctgaaacccggcgcgcgctatgcgcagccccggccgcccggctccggcgac
gcctggttgctggcagacttggcccggcaggcacaggcgccgctggtcatcctgacggcc
gaaccggtagaggcccagcggctggccgaagaaatccagctgtttgcccccgacctgcgc
gtgcgccagctgcccgactgggaaaccctgccctacgacgcgttttcgccccaccaggac
ttgatttcccagcgcttgcataccctgcattcgctgatgatgaaaacggtggacgtgctg
acggtgccgatcaccaccgcgctgtatcggctggcgccgccctcgttcctggcggcctac
acgttttcgttcaagcagaaagacaagctgaacgaagccgccttgcgcgcgcaattgacg
ctggccaactacaaccacgtcacccaggtcacggcgccgggcgaattctgcctgcgcggc
gggctgatcgacctgttcccgatggggtcggtggtgccctaccggctggacctgttcgat
gacgaaatcgaaaccatccgcagcttcgacgtggatacgcagcgcagcctgtaccccgtg
cgcgaagtgcagctgctgcccgggcgcgaattcccgatggacgaagattcgcggacccgc
tttcgcgcgcgcttccgggaagtgttcgaaggcgacccgtcgcgcgccctgccctacaag
gacatcggcaacggcatcccgttcgccggcgtggaatactacctgccgctgttcttcgaa
gaaaccgccacgctgttcgactacctgaccacgggcacggtcaccgtcaccgtcggcgat
atcgatgacgccatccagcgcttcaaccaggacacgtccagccgctacggcttcttgaag
agcgatcgcgagcgccccgtcctgccgccttcggctctgttcctggatagcgaaacgctg
tacacgcgcttgaaggaattccgccgtctgtcgttgaccgccggcgacccgcacccggac
tttcgcgccgtgcccgatgtgagcgtggcgcgccgttccgacgaccccatcgccaaactt
cgtgccctggtgcaaacgcgtcagacccgggtgctgctgtgcgccgactccgccggccgg
cgcgaaacgctggtgcagatgctgaacgagttcggcgttacgcccgatgcgcagcccgac
accatcgaagcgttcctggcgtccgacgccaacttcggcatcgtggccgcgccgctggcc
acgggcttcggcctgccccaggcgaatctggccttcctgaccgaaaacgacctgtacccg
ggccacgccggcacggggcgccgcggcaagcgcgaccaggaacgggccagcaacgtcgaa
gccatggtgcgcgacctgtccgaactgcgcgccggcgaccccgtcgtccacgcccagcac
ggcatcggccgctatcacgggctggtcaacatggacatgggcgaaggcgagatggaattc
ctgcatcttgaatacgccaacggcagcacgctgtacgtgcccgtatcgcagctgcacgtg
atcgcccgctacagcggcgcggaccccgatgcggcgccgctgcatcagctgggttcgggc
cagtgggacaaggctcgccgcaaggccgccaagcaggtgcgcgacacggccgccgagctg
ctggcgctgtatgcgcagcgcgccgcgcgcgagggctttgcgttcaacttgccgctgaac
gactatcaggccttcgccgaaggcttcggctttgaagaaaccgttgaccaggccgccgcc
atcgaagccgtgattgccgacatgacgtcgggccgcccgatggaccggctggtgtgcggc
gacgtcggtttcgggaaaacggaagttgccttgcgcgccgccttcctggccgtggccaac
ggcaagcaggtcgccctgctctgcccgaccacgctgctggccgaacagcacgcacagacg
ttttccgaccgcttcgccgattggccggtgcgcgtcgttgagctgtcgcgtttccgttcc
ggcaaggaagtggcggccgccgtcgaaggcatcaacgacggccgcgtcgacatcgtgata
ggcacgcacaagatcctgtccaaggacgtgaagttcaaacgcctgggcctggtcatcatc
gacgaagagcaccgttttggcgtccggcagaaagaagcgctgaaggcgctgcgagccgaa
gtcgacgtgctgacgctgacggccacgccgattccgcgcacgctgggcatgtcgctggag
ggcatccgggacttctccgtgatcgccaccgcgccccagaagcgcctggccatcaagacg
ttcgtgcgccgggaagacggcagcacgctgcgcgaagcgctgctgcgcgagctcaagcgc
ggcggccagtgctacttcctgcataacgaagtggaaaccatccacaaccggcgcgcccgg
ctggaagaactggtgcccgaggcgcgcatcgcggtcgcgcacgggcagatgcccgagcgc
gagctggaacaggtaatgaagggcttctaccagcagcgctacaacgtgctgctgtgcacc
accatcatcgaaacgggcattgacgtgcccagcgccaacaccatcgtcatccaccgcgcc
gaccgcttcgggctggcgcagctgcatcagctgcgtgggcgcgtgggccggtcgcaccac
caggcgtacgcctacctgctgacgccgggcgaagacgccatcaccaccaacgcgaagaag
cgcctggaagcgattcaggccatggaggaactgggttccggtttctacctggccatgcac
gacctggaaatccgcggcaccggcgaagtgctgggcgattcgcagtcgggcaacattcag
gaagtgggcttctcgatgtacaacgagatgctcaacgaagccgtgcgcgcgctgcgcgtg
ggcgaagaacccgacctggacgcgccgttcaacctggcgtgcgaagtcaacctgcacgcc
ccggccctgctgccgtccgactattgcgccgacgtgcatgcacgcctgggcatctacaag
cgcctggctcacgcggccgatgaagacgacctgatccacatccaggaagaactgatcgac
cgcttcggcaagctgcccgaagccgcgcaaacgctgctgacgacgcatcgcctgcgtctg
gcggcgcaaccgctgggcatcgtcaagatcgacgccagcgagacgcaggcactgattcag
ttcggccccaagaccagcgttgaccccgcgcgcatcattgaactggtgcagcgccaacgc
aacatcaaactggcaggacaggataaattgcgcgttgagatcaaagccgcgcagatcccc
gcccgctcagacgccatccgcgccgtgctgcgtgccttgaagtaa
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