Aquila chrysaetos chrysaetos (golden eagle): 115349572
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Entry
115349572 CDS
T08023
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
achc
Aquila chrysaetos chrysaetos (golden eagle)
Pathway
achc03013
Nucleocytoplasmic transport
achc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
achc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115349572 (UPF1)
03015 mRNA surveillance pathway
115349572 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achc03019
]
115349572 (UPF1)
Enzymes [BR:
achc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115349572 (UPF1)
5.6.2.5 RNA 5'-3' helicase
115349572 (UPF1)
Messenger RNA biogenesis [BR:
achc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115349572 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
115349572 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
115349572
NCBI-ProteinID:
XP_029889895
Ensembl:
ENSACCG00020005946
LinkDB
All DBs
Position
12:complement(1824414..1848930)
Genome browser
AA seq
1123 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRLCRQPCASQSSLKDINWDSSQWQPLIQDRCF
LSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYED
AYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQ
GDEICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVW
KSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQ
VYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH
QTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRY
RALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAK
QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNI
FYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEK
ITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKD
FIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQ
KVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRP
SNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKT
GRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQP
ELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagttcgcagaccctcaccttcctggatacggaggag
gccgagctgctcggcgccgacacgcagggatccgagttcgagtttaccgacttcactctt
cccagccaaacccaaaccccgcccgggcccgggcaggcgggaccgggacagggccaaggt
ccccccggagcgggtcagggaccgccgggaccgatcgaagcacaggttaatggacctgat
ggcattctacagaatggagctgtggatgataatgtggctaaaaccagccagcttctggca
gaattgaattttgaagaagatgaagaagatacgtattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgtaacaccagcaaa
aagtggttctgtaacgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcaaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggttgtgcaggcagccatgtgccagtcagagcagt
ttaaaggatattaattgggacagttcacagtggcagcctcttatccaagatcgctgtttc
ctttcgtggctggtaaagattccctctgaacaggaacagttgagagcacgtcagattacg
gctcaacagattaacaaactggaagaactttggaaggaaaatccatctgcaaccctagag
gacttagaaaagcctggtgttgatgaagaaccacagcatgtcctgcttagatatgaagat
gcttatcaataccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaag
aaactcaaggagtctcagacccaagataacatcacagtcagatgggacctgggcttgaac
aagaaaagaattgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaa
ggagatgagatctgcttgaggtataaaggagacctggcccctttatggaaaggaattggt
catgttatcaaagttcctgatagttctacagattatggtgatgagatagccattgaactg
aggagcagcgttggagcgcctgtggaagttactcataacttccaagtagattttgtatgg
aagtctacttcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagact
tcagtgtctgggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattatt
aaatgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcag
gtttatgctgtgaaaactgtcctgcagcgtcctctgagccttattcagggtccccctggt
accggaaaaacagtgacatcagccacaatcgtctatcatctggctagacagggcaatggg
cctgtgttagtctgtgctccgagtaatatagctgtagatcagttgactgagaagatccat
caaactggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcct
gtatccttcttggcattgcataaccagatcagaaacatggatagcatgccagagcttcag
aaactgcagcagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttac
cgtgcactgaaacgaacagcagagcgtgaattacttatgaatgcagatgtgatctgttgc
acatgtgtgggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgatt
gatgaaagcacacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaaa
cagcttattcttgtgggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagct
gcaaaggctggcctatctcagtctctcttcgagaggcttgtggtgcttgggattcgtccg
attcgcctgcaagtgcagtatcgcatgcatcctgcacttagtgcttttccatccaatatc
ttctatgagggttcactccagaatggtgttactgcagcggaccgtgtgaaaaaagggttt
gatttccagtggccacagccagataagccaatgtttttctatgttacacaaggacaggag
gaaattgccagctcaggcacctcttacttaaacaggacggaagctgccaatgtggaaaag
ataactacaaagctattgaaagctggtgccaaaccagatcagattggcattattacacct
tatgaaggtcaacgatcctatctggtgcagtacatgcaattcagtggttccttgcataca
aagctctaccaggaagtggaaattgcaagtgtggatgccttccagggccgagagaaggac
tttattatcctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgac
cccaggcgtcttaacgtagctcttacaagagcaaggtatggagtaattattgttgggaac
ccaaaagcactgtctaaacaaccactttggaatcacctgctgaattactacaaggagcag
aaggttctggtggagggaccactgaataatctccgggaaagccttatgcagttcagcaag
ccccggaaacttgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtat
gatgcacgtgaggctattattccaggatctgtctatgaccggagcagtcaagggcgccca
tccaacatgtacttccaaacccatgaccagatcgggatgatcagtgctggccccagccat
gtcgctgctatgaacattcctatccctttcaaccttgtgatgccaccaatgccaccaccg
ggatactttggccaggctaacggaccagccgcaggacgtggggcgccaaaagggaagact
ggtcgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaacctt
ccaaatagtcaagcgagccaagatgtggtgtcccagcctttctcccagggtccactgact
caggggtatatctccatgagtcagccatcacagatgagtcagcctgggctctcccaacca
gaattatcacaggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctg
tcacaggactctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactg
tcacagtattag
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integrated database retrieval system
