Aquila chrysaetos chrysaetos (golden eagle): 115353337
Help
Entry
115353337 CDS
T08023
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
achc
Aquila chrysaetos chrysaetos (golden eagle)
Pathway
achc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
achc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115353337 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achc03021
]
115353337 (PCF11)
03019 Messenger RNA biogenesis [BR:
achc03019
]
115353337 (PCF11)
Transcription machinery [BR:
achc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115353337 (PCF11)
Messenger RNA biogenesis [BR:
achc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115353337 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
115353337
NCBI-ProteinID:
XP_029898457
Ensembl:
ENSACCG00020008605
LinkDB
All DBs
Position
19:20015765..20037104
Genome browser
AA seq
1708 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDLKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSD
SKSKSPSPLKNKLPNAKDTKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSNRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQEVASQHSTKVSPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDNPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFADNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGESD
EFRDALRQQGKSTTEFQKIDGDAICRFDNREDRQLLGQAGVREEPRSPFSERFKRTRYED
PEKAPFPESPGSRFGSIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAG
SSSRIDGPPGQAAMRFEGPLVGAGASQFDGPLAGAGGAGPLRFDGPPGQLAGALRFEGPP
GQVGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPLGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPSGAGLRLEGPHGQPGVGPRLIDGPVHQGASGLRFD
GPLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVDHPGQGYNGPSHGM
QFQRPDIFDGSPGPNFNGPAGPGAQNFPLRAGHYFDEKSLQGPQYGNFNNMPMGSNQVSL
MSAQPGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSK
TDSTSAQVNETSAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYS
CGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAK
SQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKN
AIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETPESCDSPKVKE
EPDDTPTACAEESTPASTDIKTEPDESV
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaaatttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacaaactaaagcacagttggctgtatctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagcagcacatgtctcccacacct
catatgacagttaaaccacctcatcagactgctgtgcaatccgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatctcaaaatagtaaatagggatcctcgacttaataggatg
gctcaacattcttctcatgctaaagatcaatctcataggaaagaatttccaccaaacacg
actagtcagtctgataccaaggcaaacaaaacaacacaggctgaaaaacaaaactcaaca
aagcaagaaaaattgaaagcaagtgaaaaaacacaaaagaaagaacttgaccagtcagat
tcaaaatctaaatcaccatcccctttgaaaaataagctacccaatgctaaagatactaaa
acccaggaatgtgaaagcacaaaagtatctgaaattagtaagcgggatccaagactgaaa
agacaccttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagcggagaagt
acagagaaaaaagaaaaagaggaacataagacatgtgaacatagaccagtaggcagcaga
aataaagtgattaatggtgctgttcagaaacaagacacgactacagaggagtcagaaaaa
cagggtggaaaacaagggagatcaagtaatagaaaacggtcacgatcacgctctcctaag
gcacggtcaccatctacacattctccaaaaagacgagagaggagatcacccaaaagaaga
cttaggagtttgtctcccacttcatcaactcctaaaataggaaagatacgtcagataggc
cctaagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgagatccgaggagagtgaaaaaagcccaagaagac
aggccccaagaagtggcaagccagcattctacaaaagtgtctcctgatccaaaggagaat
gcagaaaattggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagaatgaagaacaccaagcacttggtaaatcccctcaccaaagacac
cgggaaaactggcctgctggcaaaggaattttatcaccccgagcaccaaagcagcagcac
cgcttaagtgtggatgccaatttacagatccccaaagaattgacatctgcaagcaagagg
gaattacttaagaaggcaaatgaacgtttaacatctggtgaaataacacaagatgagttc
ctcatggtagctcatcagatacgacagctgttccaatatcaggaaggaaagcacagatgt
aatgtctgggataaccctacagaagaaaaatgtggtttgaagaagaaacctcttctatcg
gatgcagaactaacatattatgaacataaggctaaactaaaaagaacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcattgctttctggaatagaatgtgagcaagcaaaagccaagcgtggagtacagttcgac
agaaaagaaccatttggagaaagatcaaggagacactctcctgtaagtggcactaacaga
ccttttgccgataacctctcaccacttgagagtcgacgaagacttgaggaacaaaatgct
actaaaggagcaagaggttctaagaactttgatccgtacgacagctggggagagtcagat
gaatttagagatgctctcagacaacaggggaaaagcacaacagagttccagaaaatagac
ggtgatgcaatctgcagatttgataatcgtgaagacagacagcttcttgggcaagctggt
gttcgagaggaaccaagatcaccattcagtgaacgtttcaaaagaactagatatgaagat
ccagagaaagcaccgtttccagaaagtccaggatcaagatttggaagcattgaagcaaag
cagaggataagtgcactaatggaagacagacctctatttgatggctcacctagacaggct
gctgcaagggttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggt
tcaagttccagaattgatgggccacctggacaggctgctatgagatttgaggggcctttg
gtgggggctggtgcctctcagtttgatggaccactagcaggagcagggggagctggaccc
ctaagatttgatgggccaccagggcagctggcaggggccctgaggtttgaaggaccccca
ggacaagttggtggaggaggtccactgaggtttgagggacctcttgggcagataggtggg
cctttgcgattcgaggggcctgcagggcagcctgtaggtggtcctagatttgaaggacct
ggggttggtctcaggtttgagggtccccgtggtcagccttcaggtggtctcaggtttgag
ggacctcacggtcaacctctggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccaggaggtggcctcaggtttgag
gggccacatttacagccattggggccccatggtcaacctggaggtggcctcagatttgag
gggccacatggtcagcctatggggccacatggaccatcaggtggtgggctcaggtttgag
gggccacatggaccatcaggtgctgggctcagattggaaggaccacatggtcagccaggt
gtgggtcctaggttgattgatggaccagtacaccagggagctagtggacttagatttgat
ggtcctctgggtcgggccggtccgagatttgatggttgtcacgcagctggatttgatggt
cagcctggacagctgtctctcttgcaaagatttgatggaattcatggacagcctggtcca
agatttgaaagggcacctggccagcaggcacaaccacgatttgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccccttggccttcaaggt
gcacgtttcgaaaatgtagctaaccatcctgcctcaagactagaaatgtcaccatacgga
caaggtggtccgtttgttgatcatcccggccagggctacaatggaccatctcatgggatg
cagttccagagacctgatatatttgatggttcgcctggaccaaatttcaatggaccagct
ggcccaggagcacagaacttcccattgagagctggacattactttgatgaaaaaagtctt
cagggtcctcaatatggaaacttcaataatatgccaatgggaagtaatcaggtttctctc
atgtctgctcaaccagggccttatggccaaggtcaacagtatttgccaaatcctggaagt
tttgttcagaaccctgcaggagcccttccacattcatatcctgataaccaccttggacag
cttgatgtcaatgaattgtttgctaaactgctgtcaacagggatcctcaaactgtcaaaa
actgactccacttcagcacaagtgaatgaaacatcagcccagccagctgctgaagaggaa
gatgatgaccagaatgaagatcaaaatgttccagacctcactaacttcacagttgaagaa
cttagacagcgttacgatagtgttataaatcgactgtacactggaattcagtgttactcc
tgtggaatgaggttcactacttcacagacagatgtttatgcagatcatttagattggcat
tatcgtcagaaccggacagaaaaagatgttagcagaaaaattacacacagaagatggtac
tacagtttaacagactggattgaatttgaagaaatagccgatctagaggagcgtgcaaaa
agccagttttttgaaaaagctcatgaagaggtggtgttgaagacacaagaagctgcgaaa
gagaaggagtttcagagtgtccctgctggaccagctggagcagttgagagctgtgaaatt
tgccaagagcaatttgaacagtattgggatgaggaagaggaagagtggcacctgaagaat
gctatcagagtagatgaaaagatttaccatccatcttgctacgaagattaccaaaacaca
tcatcgtttgattgcacaccatctcccagcaagactcctgtagaaaatccactaaatata
atgttgaacattgttaaacaagaaacaccagagtcctgcgactcacctaaagtcaaagaa
gaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctacagatatc
aagacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
