Achromobacter sp. 77: H4P35_05660
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Entry
H4P35_05660 CDS
T08458
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acho
Achromobacter sp. 77
Pathway
acho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H4P35_05660 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acho03400
]
H4P35_05660 (mfd)
Enzymes [BR:
acho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H4P35_05660 (mfd)
DNA repair and recombination proteins [BR:
acho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H4P35_05660 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
UB2H
AAA_30
ERCC3_RAD25_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UDG76834
LinkDB
All DBs
Position
complement(1256736..1260218)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSASSLMPAPSSSATAAPPVPATVPTLSALKPGTRYAQPRPPGSGDAWLLADLARQAGGP
LVILTAEPLEAQRLAEEIQLFAPGLRVRQLPDWETLPYDAFSPHQDLISERLHTLHSLMM
KTVDVLTVPITTALYRLAPPSFLAAYTFSFKQKDRLNEAALRAQLTLANYNHVTQVTAPG
EFCLRGGLIDLFPMGSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMD
EDARNRFRARFREIFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFEETATLFDYVAEGTV
MVTVGDIDDAIQRFNQDTASRYGFLKSDRERPVLPPSALFLDNESLYGRLKAFRRLSLTA
GQPHPDFRSAPDVSVVRRAEDPIAKLRTLVQAGQTRVLLCADSAGRRETLVQMLHEFGVT
PDAQPETIEAFLASDAHFGIVASPLGVGFQLPDANLAFLTENDLYPGLATPGRRGKRDQE
RASNVEAMVRDLSELREGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYANGSTLYVP
VSQLHVIARYSGADPEAAPLHQLGSGQWDKARRKAAKQVRDTAAELLALYAQRAAREGFA
FNLPLNDYEAFAEGFGFEETADQAAAIQAVISDMTSGRPMDRLVCGDVGFGKTEVALRAA
FLAVANGKQVALLCPTTLLAEQHAQTFTDRFADWPVRVVELSRFRSAKEVSAAIEGINDG
RVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRT
LGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETI
HNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANT
IVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSG
FYLAMHDLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRAGEEPDLDAPFNLAC
EVNLHAPALLPSDYCADVHARLAIYKRLAHAADEDDLIHIQEELIDRFGKLPEAAQTLLA
THRLRLAAQPLGIVKIDASEAQALIQFGPKTSVDPARIIDLVQRQRHIKLAGQDKLRAEI
KAPLIPARADAVRAVLRALK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcttccagcctgatgcccgccccttcctcctccgccacggccgcccctcccgtc
cccgccacggttcccaccctgtccgcgctgaagcccggcacgcgctacgcgcagcccagg
ccgccgggttccggcgacgcctggctgctggcggatctggcccgccaggccggcggcccg
ctggtcatcctgacggccgagcccctggaagcgcagcgcctggccgaggaaatccagctg
ttcgcgcccggtctgcgcgtgcggcagctgcccgactgggaaacgctgccctacgacgcg
ttctcgccgcaccaggacctgatttcggagcgcctgcacacgctgcattcgctgatgatg
aagacggtggacgtgctgaccgtgcccatcaccacggcgctgtaccggctggcgccgccc
tcgttcctggccgcttacacgttctcgttcaagcagaaggaccgcctgaacgaagcggcg
ctgcgcgcgcagctcacgctggccaattacaaccacgtcacccaggtgaccgcgcccggc
gaattctgcctgcgcggcggcctgatcgacctgttcccgatgggctcggtggtgccgtac
cgcctggacctgttcgacgacgaaatcgagaccatccgcagtttcgacgtggacacccag
cgcagcctgtaccccgtgcgcgaggtccagctgctgccaggccgcgaattcccgatggac
gaggacgcgcgcaaccggttccgcgcgcgctttcgggaaattttcgaaggcgatccctcg
cgcgccctgccctacaaggacatcggcaacggcatcccctttgccggcgtcgagtactac
ctgccgctgttcttcgaagagaccgccacgctgttcgactacgtggccgaaggcacggtc
atggtcacggtcggcgacatcgacgacgcgatccagcgcttcaaccaggacacggccagc
cgctacggcttcttgaagagcgatcgcgagcgtcccgtgctgccgccctcggccctgttc
ctggataacgaatcgctgtatggccggctgaaggcctttcgccgcctgtcgctgactgcc
ggccagccgcaccccgacttccggtccgcgcccgatgtcagcgtggtgcgccgcgccgag
gatccgatcgccaagctgcgcacgctggtgcaggcgggccagacccgcgtgctgctgtgc
gccgattccgcggggcgccgcgaaaccctggtgcaaatgctgcacgagttcggcgtcacg
cccgacgcgcagcccgagaccatcgaggccttcctggcgtcggacgcgcatttcggcatc
gtcgcctcgccgctgggcgtgggcttccagctgccggacgcgaacctcgccttcctgacc
gaaaacgacctctaccccggattggcaacgccgggacgtcgcggcaagcgcgaccaggag
cgcgccagcaacgtcgaagccatggtgcgcgacctgtccgagctgcgcgagggcgatccc
gtcgtccacgcccagcacggcatcgggcgctaccacggcctggtcaacatggacatgggc
gaaggcgagatggagtttcttcatcttgaatacgccaacggcagcacgctatacgtgccg
gtgtcgcagctgcacgtgatcgcccgttacagcggcgcggatccggaagccgcgccgctg
caccagctgggctcggggcaatgggacaaggcccgtcgcaaggcggccaagcaggtgcgc
gacaccgccgcggaactgctggcgctgtatgcgcagcgcgccgcgcgcgaaggctttgcg
ttcaacctgccgctgaacgactacgaggccttcgccgagggcttcggcttcgaagagacg
gccgaccaggcggccgcgatccaggctgtcatcagcgacatgacctcgggccgcccgatg
gaccgcctggtctgcggcgacgtcggcttcggcaagacggaagtcgcgctgcgcgccgcc
ttcctggccgtcgccaatggcaagcaggtggcgctcttgtgccccaccaccctgctcgcc
gagcagcacgcccagacctttaccgaccgattcgccgactggcccgtacgcgtggtggaa
ctgtcgcgcttccgctcggccaaggaagtctcggccgccatcgaaggcatcaacgacggc
cgggtcgacatcgtcatcggcacgcacaagattctgtcgaaagatgtgaagttcaagcgg
ctgggtctggtcatcatcgacgaggagcaccgtttcggcgtgcgccagaaggaagcgctc
aagtcgctgcgggccgaggtcgacgtcctgacgctcaccgccacgcccattccccgcacg
ctcggcatgtcgctggaaggcatccgcgacttctccgtcattgccacggcgccgcagaag
cgcctggccatcaagaccttcgtgcggcgcgaagacggcagcacgctgcgcgaggccctg
ctgcgcgaactcaagcgcggcggccagtgctacttcctgcacaacgaggtcgagaccatc
cacaaccgccgggcgcgcctggaagaactggtgcccgaagcccggatcgccgtcgcgcac
ggccagatgcccgagcgcgaactcgaacaggtgatgaagggcttctaccagcagcgctac
aacgtgctgctgtgcaccaccatcatcgaaaccggcatcgacgtgcccagcgccaacacc
atcgtgatccatcgcgccgaccgcttcggcctggcgcagcttcaccagttgcgcggacgc
gtcgggcgctcgcaccatcaggcctacgcctacctgctgacgccgggcgaggacgccatc
accagcaacgccaagaagcggctggaagccatccaggccatggaagagctcggctcgggc
ttttacctggcgatgcacgacctcgaaatccggggcaccggcgaagtgctgggcgactcg
cagtcgggcaacatccaggaagtgggcttctcgatgtacaacgagatgctcaacgaggcc
gtgcgtgcgctgcgcgctggcgaagaacccgacctggacgcgcccttcaacctggcgtgc
gaggtcaacctgcacgccccggcgctgctgccatccgattattgcgccgacgtgcatgcg
cgcctggccatctacaagcggctggcgcacgccgccgacgaagacgacctgatccacatc
caggaagaactgatcgaccgattcggcaagctgccggaagcggcccaaaccctgctggcc
acgcatcgcctgcgccttgcggcccagccgctgggcatcgtcaagatcgacgccagcgaa
gcgcaggccctgatccagttcggccccaagacctcggtcgatccggcccgaatcatcgac
ctcgtccagcggcagcgtcacatcaagctggccggacaggacaaattgcgcgccgagatc
aaggcccccctcattcccgccagggccgacgccgtgcgcgccgtcctgcgtgcgctcaag
taa
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