Acidipropionibacterium virtanenii: JS278_01702
Help
Entry
JS278_01702 CDS
T05538
Symbol
ligD_1
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acij
Acidipropionibacterium virtanenii
Brite
KEGG Orthology (KO) [BR:
acij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JS278_01702 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acij03400
]
JS278_01702 (ligD_1)
Enzymes [BR:
acij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JS278_01702 (ligD_1)
DNA repair and recombination proteins [BR:
acij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JS278_01702 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AXE38865
UniProt:
A0A344UUB7
LinkDB
All DBs
Position
1865710..1866579
Genome browser
AA seq
289 aa
AA seq
DB search
MPRHSGDGARVRLGSPDKVLFPETGFTKRDLADYYRRVSPVFLEQLRDRPISRVRYPDGI
EGQRIFQRNISRGMPGWIRRFEVSASPGAMGTPQDRARTVTYPVVDDADGLAWMAGQATV
EFHTPQWRLGPRGGVRRPDRLVIDLDPGEGTGLEECARVALMIRDRLEHDGLHPRPVTSG
GKGLHLYARLTAQAPIPTTARAVHGYARRLAEGLAAEHPGTVIAHASKQDRVGRVFIDWS
QNHPAKTTVTPYSLRAKGGSPSAAAPRDWDEIGPGLAQLGPADVLDRLD
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgacacagcggagacggggcccgggttcgcctcggttcccccgacaaggtcctg
ttccccgagacgggattcaccaagcgtgatctcgccgactactaccggcgcgtctcgccg
gtgttcctggaacaactgcgcgaccgcccgatcagccgggtgcgatatcctgacgggatc
gaggggcagcggatcttccagcgcaacatctcacggggcatgccgggatggatccgccgg
ttcgaggtctcggccagtcccggggcgatgggcactccgcaggacagggcgaggacggtg
acctatccggtcgtcgacgacgccgacggtctggcctggatggccggtcaggccactgtc
gagttccacaccccgcagtggaggctcggccctcgcggcggggtgcgccgccccgaccgc
ctggtgatcgatctggatccgggggagggcaccggtctggaggagtgcgcccgggtggca
ttgatgatccgcgaccggctcgagcacgacgggctgcacccgaggcctgtgaccagcgga
gggaagggcctgcacctctacgcccggttgaccgcgcaggccccgataccgaccaccgcg
cgcgccgtccacggctatgcccgccggctggccgagggcctcgccgccgagcatcccggc
accgtgatcgcccacgcctccaagcaggatcgcgtcggacgggtgttcatcgactggagc
cagaaccatccggcgaagaccaccgtgaccccttacagcctgcgcgccaagggcggatcc
ccgagcgccgccgcgccccgcgactgggacgagatcggcccgggcctggcccagctgggc
ccggccgacgtcctggacagactggactga
DBGET
integrated database retrieval system
