Acidipropionibacterium virtanenii: JS278_02322
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Entry
JS278_02322 CDS
T05538
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acij
Acidipropionibacterium virtanenii
Pathway
acij03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JS278_02322 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acij03400
]
JS278_02322 (mfd)
Enzymes [BR:
acij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JS278_02322 (mfd)
DNA repair and recombination proteins [BR:
acij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JS278_02322 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
DUF1474
Motif
Other DBs
NCBI-ProteinID:
AXE39464
UniProt:
A0A344UW16
LinkDB
All DBs
Position
complement(2510312..2513914)
Genome browser
AA seq
1200 aa
AA seq
DB search
MSLGGLVSLLSREPVLTRVIRDGLTGRTPTLDLGAAQPSRPAVAAAIVRGLEGSGRGLPM
LLITSTFREAEEVTAHLESWLGTDEVCYYPSWETLPHERLSPRSDTVGRRLSVLRRLMGT
DGLTPPAVVVAPIRAALQPQVADLGAISPVRIAVGQEYDLTELASELVRAAYVRVDMVTR
RGEFAVRGGILDVFPPVLDHPVRIDFFGDEVEEIRSFAVADQRSTEDTHDDVVAAPCREL
ILTPEVRARARALLPDHPELADMLEKIGQGQAVEGMEALIPALVDRIELLSDVLPPNSLV
MLSDPELIRSRAAELVQTSEEFLHAGWAAAAGGGQAPIDLAASGYRTLAEVRSRCLDRGM
SWWSMSSFSLDAPIGASQATDEDLGSAPETLNLHLDAVEPWHGDVESAVASMRTRLEEGW
TVILTVEGEGLGRRMVEVLSEHGVAARLEPDIDAGATDPVVHIVRAHQRQGFSSERLKLV
VHGSADLTGEAPGADRAAKKMPARRRNQIQPMDLKAGDLVVHEQHGVGRYVEMIQRTVAG
ATREYLVIEYAPARKGQPGDRLFVPMDSLDEVTRYVGGDAPALDKMGGADWKKRKARARK
AVKQIAAGLIKLYAARQATKGHAFGPDTTWQHELEDAFAYVETPDQLTTIADVKRDMEQV
VPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHTQTFAERYAGFPVN
VASLSRFQTDAEARKVKEGIERGTIDVVVGTHRLLSDQIHFKDLGLVVIDEEQRFGVAHK
ESLKKLRVNVDVLSMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTFAGPYDQGQVV
AAIRRELAREGQVFFIHNRVQDIEKTAARIRELVPEARVVTAHGQMNEKQLEQIMVDFWE
RRADVLVCTTIVESGLDISTANTLIVDRADRMGLSQLHQLRGRVGRSRERGYAYFLYPAD
KPLTETAHDRLATMAQHTDLGAGMSIAMKDLEIRGAGNMLGGEQSGHIADVGFDLYIRLV
GDAVASFRGEDAEEEPGMRIELPVDASLPTDYVESERLRLEMYRRLAEVRSEEDVDAIRE
ELLDRYGPLPETVEALLGVARFRLLCRSRGIRDVAPAGNSIRFSPAHLPESRVMRLKRLY
PGSVVKDNAGLVMVPRPRTARIGGRPLGGAELLEWASGVVADVLTVAAPAREADPQPAQA
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcttggcggtctggtgtcccttctgtcccgtgagcccgttctcacccgagtgatc
cgtgacggtctgaccggccgtacacccaccctcgacctgggtgccgcccagccctcccgg
ccggccgtcgccgccgcgatcgttcgcggactggagggttccgggcgcggactgccgatg
ctgctgatcacctcgaccttccgggaggccgaggaggtcaccgcccatctggagtcctgg
ctgggaaccgatgaggtctgctactacccctcctgggagacccttccgcacgagcgcctg
agcccccgctccgacacggtcgggcgacgcctctccgtgctgcgccggctgatgggcacc
gacgggctcaccccgccggccgtcgtcgtcgcccccattcgcgccgcccttcagccccag
gtcgccgatctcggggcgatctccccggtgcgcatcgcggtcggtcaggagtacgacctc
acagaactggcctccgagctcgtccgcgccgcctacgtgcgcgtcgacatggtgacccga
cgcggcgagttcgcggtgcgcggcggcatcctcgacgtcttccccccggtgctcgatcac
ccggtgcgcatcgatttcttcggcgacgaggtggaggagatccgatccttcgcggtggcc
gaccagcgctccaccgaagacacccatgacgacgtcgtcgccgccccctgccgcgaactc
atcctcacccccgaggtgcgcgcccgcgcccgtgccctgctgcccgaccaccccgagctg
gccgacatgctggagaagatcggccaggggcaggccgtcgagggcatggaggccctcatc
ccggctctggtcgaccggatcgaactgctctcggacgtgcttccccccaactccctggtg
atgctctcggatcccgagctgatccgctcgcgcgccgcggaactcgtgcagacctccgag
gagttcctccatgccggctgggcagccgcagccggaggagggcaggccccgatcgatctg
gcggcctcgggctaccgcaccctcgccgaggtgcgttcgcgctgcctggaccgcggcatg
tcgtggtggtccatgtcctcgttctccctggacgcccccatcggcgcctcccaggccacc
gacgaggatctcggcagcgcaccggagaccctcaacctgcacctcgatgccgtcgagccc
tggcacggcgacgtggagtccgcggtcgcctccatgaggacgcgtctggaggagggctgg
acagtcatcctcaccgtcgagggtgagggccttggtcgccggatggtcgaggtattgagc
gagcacggcgtcgcggcccgcctggagcccgacatcgacgccggggccaccgatccggtg
gtccatatcgtgcgggcccaccagcgtcagggcttctccagcgaacgcctcaaactcgtg
gtgcacggctcggccgatctcaccggcgaggcccccggcgccgaccgcgccgccaagaag
atgcccgcccggcgccgcaaccagatccagcccatggacctcaaggccggggacctggtg
gttcacgagcagcacggcgtcggccgttatgtcgagatgatccagcgcaccgtcgccggg
gccacccgtgaatatctcgtcatcgagtacgcgcccgccaggaagggccagcccggtgac
cggctcttcgtcccgatggactccctggacgaggtgacccgctacgtcggtggagacgcc
cccgccctggacaagatgggcggggccgactggaagaagcgcaaggcacgggcgcggaag
gccgtcaagcagatcgccgccggcctcatcaagctctacgccgcccggcaggccaccaag
ggtcacgccttcggccccgacaccacctggcagcacgaactcgaggacgccttcgcctac
gtcgagacccccgaccagctcaccaccatcgccgacgtcaagcgagacatggaacaggtg
gtgccgatggaccgcctggtgtgcggcgacgtcggctacggcaagaccgagatcgcggtg
cgcgccgccttcaaggccgtccaggacggcaaacaggtcgccgtgctggtgcccaccacg
ctgctggtgcagcagcacacccagaccttcgccgagcgctacgccggattccccgtcaac
gtcgcatccctgtcgcgcttccagaccgacgccgaggcgcggaaggtcaaggagggcatc
gagcgcggcaccatcgacgtcgtcgtcggcacccatcggctgctctccgaccagatccac
ttcaaggatctcggcctggtggtcatcgacgaggagcagcgcttcggggtcgcgcacaag
gagtccctcaagaaactgcgggtcaacgtcgacgtgctgtcgatgagcgccacccccatc
ccgcgcaccctcgagatggccgtcaccggcatccgggagatgagcaccatcgccaccccg
cccgaggagcgtcaccccgtgctcaccttcgccggaccctacgaccagggccaggtggtc
gcggcgatccgccgcgagctcgcccgcgaggggcaggtcttcttcatccacaacagggtg
caggacatcgagaagaccgccgcccggatccgcgagctggtgcccgaggcccgcgtggtc
accgcccacggccagatgaatgagaagcagctcgaacagatcatggtggacttctgggag
cggcgcgccgacgtgctggtgtgcaccaccatcgtcgagtccggcctggacatctccacc
gccaacacgctgatcgtcgaccgcgccgaccggatgggcctgtctcagctgcaccagctg
cgcggccgggtgggacgctcccgcgagcgcggctacgcctacttcctctacccggccgac
aagccgctgaccgagaccgcccacgaccggctggccaccatggcccagcacaccgacctg
ggggccggcatgtcgatcgccatgaaggatctggagatccgtggggccggcaacatgctc
ggtggggagcagtccggccacatcgccgacgtcggcttcgacctgtacatccggctggtg
ggcgacgccgtcgccagcttccgcggcgaggacgccgaggaggagcccgggatgcgcatc
gagctgcccgtcgacgccagcctgcccaccgactacgtcgagtccgagcggctgcgcctg
gagatgtaccgcaggctggcggaggtgcgctccgaggaggatgtcgacgccatccgggag
gagctgctggaccgctacggacccttgcccgagaccgtcgaggcgctgctgggagtggcg
cgattcaggctgctgtgccgctcccgcgggatccgggacgtggcgcccgccggcaattcc
atccgcttctccccggcccacctgcccgagtcgcgggtgatgcggctcaagcgcctgtat
ccgggctcggtggtcaaggacaatgccggactggtgatggtgcccaggccgagaaccgcc
cggatcggcggtcgtccgctgggcggggccgaactgctggagtgggccagcggggtcgtc
gccgatgtcctcaccgtcgctgcgccagcccgcgaggccgacccccagccggcccaggcg
tag
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