Acidovorax carolinensis NA3: CBP34_09135
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Entry
CBP34_09135 CDS
T04997
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acin
Acidovorax carolinensis NA3
Pathway
acin03030
DNA replication
acin03410
Base excision repair
acin03420
Nucleotide excision repair
acin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBP34_09135 (ligA)
03410 Base excision repair
CBP34_09135 (ligA)
03420 Nucleotide excision repair
CBP34_09135 (ligA)
03430 Mismatch repair
CBP34_09135 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acin03032
]
CBP34_09135 (ligA)
03400 DNA repair and recombination proteins [BR:
acin03400
]
CBP34_09135 (ligA)
Enzymes [BR:
acin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBP34_09135 (ligA)
DNA replication proteins [BR:
acin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBP34_09135 (ligA)
DNA repair and recombination proteins [BR:
acin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBP34_09135 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBP34_09135 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBP34_09135 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBP34_09135 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
ART51787
UniProt:
A0A240U2Z8
LinkDB
All DBs
Position
1:1961184..1963295
Genome browser
AA seq
703 aa
AA seq
DB search
MTENFDLFSAAAPADIAQPAIKIKALRDQLNHWAHQYYVLDAPTVPDADYDRAFRELQAL
EAAHPELITPDSPTQRVIGAVMDGLAPVRHAVPMLSIHTETDTEATGAQAFDARVRRELG
LSETDPAIEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNVRTIRQIPLTLP
EGVPPLLEVRGEVYMRRADFDALNERQREQGGKTFVNPRNAAAGAVRQLDSGITAQRPLS
FFAYGLGAITPPAEGGPVFRTHYEMLQTLKSWGFPVAAQVQIAVGATELVAFHQQVGASR
DALPYDIDGVVYKVNSLQLQRDLGFKTREPRWAVAHKYPAQEMATRIEGIDVQVGRTGKI
TPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDHVIVRRAGDVIPEVVGVVPGNRAG
YVPNFKMPRTCPVCGSDVVREKGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDK
LVDQLVDANVIRTLPDLYRLGLTSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFGLGL
RHVGEATAKDLARHFGTLDAIMDASVEQLLQVPDVGPVVAQSLHTFFQQPHNREVVEQLR
ACGVTWPEGAPAERAPQVLAGKTVVLTGTLPTLSRDAAKDMLEAAGAKVAGSVSKKTSYV
VAGEEAGSKLAKAQELGVPVLDEAGMLALLQHAGGTAAKEGAD
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaatttcgacctgttttcggccgcagcgcccgcagatattgcgcaaccagct
atcaaaattaaagcgctgcgcgaccagctcaaccactgggcgcaccagtactacgtgctg
gacgcgcccacggtgcccgacgccgactacgaccgtgcgttccgcgaactgcaggccctg
gaggccgcgcaccccgagctcatcacccccgactcgcccacgcagcgcgtgattggcgcg
gtgatggacggcctggcgcccgtgcgccacgcggtgcccatgctcagcattcacaccgag
accgacacggaggccacgggcgcgcaggcgtttgatgcgcgcgtacggcgcgagctgggc
ctttcggaaacagaccccgccatcgaatacgtggccgaacccaagttcgacggcctcgcc
atgagcctgcgctatgaaaacggccgcctagtgcaggccgccacgcgcggtgatggcgaa
gtgggcgaggacgtgacgcacaacgttcgcaccatccggcagatccctttgaccctacca
gagggcgttccgccgctgctggaagtgcgcggtgaggtctacatgcgccgtgccgacttc
gacgcgctcaacgagcgccagcgcgagcagggcggcaagacctttgtgaacccgcgcaat
gcggcggcgggcgcggtgcgccagctcgattccggcatcaccgcccagcgccctctgagc
ttttttgcctatggcctgggtgccatcacaccgcctgctgaaggcgggccggtgttccgc
acgcactacgagatgctgcaaaccctgaaatcatggggttttccggtcgcagcgcaggtg
cagattgcggtaggcgctacggagttggtagcgtttcaccagcaggtgggcgccagccgc
gatgcattgccgtacgacatcgatggcgtggtctacaaggtcaactccctgcagctgcag
cgcgacctgggtttcaagacccgcgagccgcgctgggccgtggcgcacaaatacccggca
caggaaatggccacgcgcatcgagggcatcgatgtacaggtgggccgcaccggcaagatc
acgccggtggcacgcctggcgcccgtgtttgtgggcggggtcaccgtcaccaacgccacg
ctgcacaacctgtttgagatccgcaagaagggcgtgcgcgtgggcgaccatgtcatcgtg
cgccgcgcgggcgatgtgattccggaggtcgtcggcgtggtgccgggcaaccgcgccggc
tatgtgcccaacttcaaaatgcccagaacctgccccgtgtgcggcagcgacgtggtgcgc
gaaaaaggcgaggccaaccaccgctgtacgggcggcctgttctgcgccgcgcagcgcaag
gaagccatcctgcactttgccgcgcgccgcgccatggacatcgagggcctgggcgacaag
ctggtggaccagttggtggatgccaacgtgatccgcacgctgcccgacctgtaccggctg
gggctcacatccctgattgcgctggagcgcatggccgagaaatcggcccagaacgtgctg
gctgcgctcgaaaaatcgaagcaaaccacgctgccgcgctttctgttcggcctggggctg
cgccatgtgggcgaggccacggccaaggacctggcgcgccactttggcacgctggacgcc
atcatggatgccagcgtcgagcaattgctgcaggtgcccgacgtgggcccggtggtagcg
cagagcctgcacaccttcttccagcagccgcacaaccgcgaggtggtggagcaactgcgc
gcctgcggcgtgacctggcccgaaggcgccccggccgagcgcgcgccccaggtgctggct
ggcaagacggtggtgctgactggcaccttgcccaccctgagccgcgacgccgccaaagac
atgctcgaagccgctggcgccaaggtggccggttcggtcagcaaaaagaccagctatgtg
gtggcaggcgaggaagccggcagcaagctggccaaggcccaggagctgggcgtgccggtg
ctggatgaggccggcatgctggcgctgttgcagcacgctggcggcacggccgcaaaagaa
ggcgccgactga
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