Arthrobacter citreus: HPK19_22240
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Entry
HPK19_22240 CDS
T06606
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acit
Arthrobacter citreus
Pathway
acit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HPK19_22240 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acit03400
]
HPK19_22240 (ligD)
Enzymes [BR:
acit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HPK19_22240 (ligD)
DNA repair and recombination proteins [BR:
acit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HPK19_22240 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QKE75252
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All DBs
Position
4673715..4674959
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AA seq
414 aa
AA seq
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MNKSVFSKRDRNYIGLFFILGFDLKLEKFLVGVIKGNDIVQIGSFSKGISEDEKRILIQA
IEANKKGTDNNLINVDPGICIELEFQSIVNEKLKNAKFLSFQLQQAWKECTWDGLLLTNL
IVEQELTLTSLEKVIWKSPYINKESFLSYLAQIAIYMLPFLKNRLLTTIRFPDGIEGESF
FQKNCPDYAPSFIKTEEQEGNNFIICNDVSTLLWLGNQLAIEYHIPFQTYDADNPIEIVF
DLDPPSTDAFSLAIKAALEMKLIFDSFQIKSYPKVSGSKGIQVHIPIKENSLTYDDTRVF
TSFIAHYLIEKFPDDFTIERLKKNRNNRLYIDYVQHAKGKTIICPYSTRGKEKPTVATPL
FWDEVNDELKIETFTIPFVLNRLENSPCPMEDYFEQENISLVNLISKIKESQLK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatccgtatttagtaaacgagatcgaaattatataggtcttttctttatttta
ggatttgatttaaagctagagaaattcttagttggggtcataaaaggaaatgatattgta
caaattggctctttctcaaaaggaattagtgaagatgaaaagcgcattttgattcaagct
atagaagctaataaaaaggggaccgataataatttaattaatgtggatcctgggatttgt
attgaattggagtttcaaagcattgtaaatgaaaaattaaaaaatgcaaaatttttatca
tttcagttacagcaagcatggaaagaatgtacttgggatggcctgctgttaactaatcta
attgtagagcaagaactaacactcacaagtctggaaaaggtaatttggaaaagtccttat
ataaataaggagagttttttatcctatttagcacaaatagctatttacatgcttccattt
ctgaaaaatcggttattaacaacgattcgtttccctgatggaatagaaggtgaatctttt
tttcaaaaaaattgtccagattatgccccaagttttattaaaacggaagaacaagaagga
aacaattttattatttgtaatgatgtatcaaccttactctggttagggaatcaattggca
attgagtaccatatcccttttcaaacatatgatgcggacaatccaattgaaatcgtattt
gatttggatccaccgagtacagatgctttttcattagcaataaaagccgcattagaaatg
aaattaatctttgattcgtttcaaataaaaagctatcctaaagtgtcaggaagtaagggg
attcaagttcatattccgattaaagaaaattcactaacctatgatgatacaagagtattt
acttcttttattgcacattatttaattgagaaatttccagatgattttacaatagaaaga
ttaaagaaaaatcgaaacaaccgtctttatattgattatgtacagcatgcaaaaggaaaa
acaattatttgcccatattcaacgagggggaaggagaaaccgacagttgcaactcctctt
ttttgggatgaggtaaatgatgaattaaaaattgaaacttttacaattccttttgtctta
aatcgattagaaaatagtccttgcccaatggaagactattttgagcaagaaaatatttca
ttagtgaatttaatttctaaaattaaagaaagccaattaaagtaa
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