Acinetobacter sp. NCu2D-2: A3K93_05515
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Entry
A3K93_05515 CDS
T08302
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aciu
Acinetobacter sp. NCu2D-2
Pathway
aciu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aciu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A3K93_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aciu03400
]
A3K93_05515
Enzymes [BR:
aciu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3K93_05515
DNA repair and recombination proteins [BR:
aciu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A3K93_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ANF81693
UniProt:
A0A172YNC9
LinkDB
All DBs
Position
1172520..1175978
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQQEIKQLNLSKLKSGEKRWLGNLHGSATGFLLKEIVKQYDQLFVVVARNNQHLGQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPKKGVLLVSTSTLAQRVAPT
NWVLGEHFDIRVGQKFDLEQQKKKLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQDAPI
RIDLFDDEIETLKFFDPETQRTTQNLDQFTVLPAQEFPLKEARSTFRDRYAEAFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFEAEAMKTQSSLISYLPQHSIVITDQSFEDGINQFW
VDVVRRYEDRRHNVDQPILEPSALFFQTSQLLESLNQFPRIVAAQEPFAEKSGIVNLNTQ
TPPRLPVDPKQEKPFAAVKKYIDEANHPVLLVAESAGRRETLKDALRASLGDIPTVEGFD
EFIQSLHAIAITSAPLERGLELTEQLSIISENQLYEHRVVQRRRKRQQEVSEEFLVRSLT
ELSIGAPVVHIDYGVGRYAGLITLSIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRTAKPGISFELDQSLYMQFAS
GFAYEETLDQANAIEATLHDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNRQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSSKAHTKIIDDLADGKVDIVIGTHKILQ
ENVRFKNLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTGDSIKEAVLRELLRGGQVYFLHNEVDSIERAAENLRELVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKGLKGDAEKRLDALQRASNLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDSREKLDNIRMELIDRFGLPPQPVKQLFAVHQIRLKAEQLGI
TKIDISSQGGHIEFAPDTPVQAVTIIQMMQKHPTYFRMNGGQRLKVMVMLEDYEKRIQFI
TDLLDSLLKELH
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgttccaacaagaaattaaacaactcaatttatctaaactcaaatctggcgaaaaacgt
tggttagggaacctgcatggttctgcaacgggatttttgttgaaagaaatcgtaaagcaa
tacgatcagctctttgttgtggttgcacgcaataatcagcatttggggcagttggaaagt
gaacttgaattttatggggtaaaaccgaccatttttcccgattgggaaattttgccgtat
gaccgattatcaccgcatcaagatatcgtgtctgaacgtttggcgatattatcaaatatg
cctaaaaaaggcgtgctattggtatcaacctcaactttagcgcaacgtgttgcgccgacc
aattgggtcttgggtgaacactttgatatacgtgtcggacaaaagttcgatttagagcaa
caaaagaaaaaattaatccaagcgggctatcatctagtcgatacagtttatgaccacggt
gagtttgcagtacgtggcagcatcatggatatctatgcgtcaggtcaagatgcaccgatc
cgtatcgatctgtttgatgatgaaattgaaactttaaaattctttgatccagaaacacaa
cgaactacacagaatctagatcaatttactgttttacctgctcaagaattcccactcaaa
gaagcacgttcgacctttagagatcgttatgcagaagcatttccaactgcaaaccctaag
aaaaatccaatttatcaggatgtcttagacggtattgcatcacctgggattgagttttat
ttgccgctgttttttgaagcggaggcaatgaaaacacaaagcagtcttatttcgtatcta
ccacagcattccattgtcattacagatcagtcattcgaagatggtattaatcaattttgg
gttgatgtagttagacgttatgaagatcgtcgtcataatgttgatcaacccattttagaa
ccctcagctttattctttcaaacgtctcagttgctagagtcactgaatcaatttccacgt
attgtggctgcacaagaaccttttgctgaaaaatcgggtatcgttaatctaaatactcaa
acaccgccacgtttaccggttgatcctaagcaagaaaaaccctttgctgcggttaaaaaa
tatattgatgaagccaatcatccagttttattggttgctgaaagtgcgggtcgtcgtgaa
actttaaaggacgcgctgcgtgctagcttgggagatatcccaactgtagaaggatttgat
gaatttattcagtccttacatgcaattgccattaccagtgcaccacttgaacgtggatta
gagctgaccgagcaactcagcatcatttcagaaaatcagctttatgaacatcgcgtggtt
caacgccgtcgtaaacgtcagcaagaggtttcagaagagtttctagttcgcagtctgact
gaactctcaattggtgcacctgtggtgcacattgattatggcgtagggcgctatgcagga
ctgattaccttaagtattgatgatcaggaccacgagtttttacaacttgattatgcagat
gcggcaaaagtctatgttcctgtcaccaatttgcatctcattagtcgctatagtggtggt
gaccccgatttagccccactacataaactcggcacagacgcatggtctaaagccaaacgt
aaagcgctggaacaaattcatgacgttgcagcagaacttctgcatattcaagcgcgtcgt
actgcgaaaccaggtatcagctttgaacttgatcaaagtctatatatgcagtttgccagt
ggttttgcctatgaggaaacgcttgaccaagccaatgcgattgaagcaactttgcatgat
atgcaacaggctaaaccgatggatcgtttggtgtgtggtgatgttggtttcggtaaaact
gaagtggcgatgcgtgctgcttttgtagcagtacaaaataatcgtcaggtggcggtgctt
gtcccaacgacactcctagctcagcagcattatgaatcgtttaaagatcgttttgctgat
tggccggttcgcattgaagtgttatcacgttttggctcatcaaaagcgcataccaaaatc
attgatgatcttgccgatggtaaagtggatatcgtgattggtacccataaaattttgcaa
gagaatgtgcgatttaaaaatttaggtttgatgattgtcgatgaagaacaccgctttggt
gtgcgtgataaagaacgcattaaagccatgcgtgctgacgtcgatatgttaacgctgacc
gcaacaccaatcccgcgtactttaaatatggcctttagtggcatgcgtgatctatcgatt
attgccacacctccagcacgccgtcttgctgttaaaacctttgtgcaggagcatactggc
gactccattaaagaagcagttctgcgtgagttgctacgtggtggtcaagtgtatttcttg
cataatgaagtggatagtattgaacgtgcagctgaaaatttacgtgaactagtccctgaa
gcgcgtgttgcagttgcacatggacaaatgcgtgaacgcgagcttgaacaagtcatgcag
cagttctatcacaaagaatataacgtcttagtctgctcaacgatcattgaaacagggatt
gatgttcctaatgccaataccattatcattgagcgtgccgacaaactcggtcttgcgcaa
ttacatcaattacgtggtcgtgttgggcgttcacatcaccaagcctatgcatatctgttg
gtaccttcaattaaaggcttaaaaggtgatgctgaaaaacgtctggatgcgctacaacgt
gcttctaatttaggtgcaggttttatgctcgccacagaagacttagaaattcgtggtgcg
ggtgaactattgggtgagcagcaaagtggttcaatgcaggcgattggttatagcctgtat
atggaaatgctggaaaaagccaccaaagccattcaaaagggcaaaaccccgaatttcgat
gcgccattatcgttaactgcagagattaatctgcatatgccagccttaatcccagatgat
tacttaggcgatgttcatcaacgtttattgttctataagcgcatcagtaatacggatagc
cgagaaaaactcgataacatccgtatggaattaattgatcgttttggcctacctccacag
ccggttaaacagctttttgcggttcatcaaatacgtttaaaagcagagcagttgggtatt
actaaaattgatattagtagccaaggtggacacattgaatttgcaccggatacacctgtg
caggctgtgaccatcattcaaatgatgcaaaaacatccaacttatttccgtatgaacggc
gggcaacgtttgaaagtgatggtgatgctggaagattacgaaaaacgcatacaatttatt
acggatttattagatagtttgctgaaagagttacattaa
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integrated database retrieval system
