Acholeplasma laidlawii: ACL_0020
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Entry
ACL_0020 CDS
T00659
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acl
Acholeplasma laidlawii
Pathway
acl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACL_0020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acl03400
]
ACL_0020 (mfd)
Enzymes [BR:
acl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACL_0020 (mfd)
DNA repair and recombination proteins [BR:
acl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACL_0020 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UB2H
RecG_dom3_C
AAA_16
DUF1947
Motif
Other DBs
NCBI-ProteinID:
ABX80663
UniProt:
A9NE83
LinkDB
All DBs
Position
22548..25979
Genome browser
AA seq
1143 aa
AA seq
DB search
MTKNLLNSIYKDAAILNARTGDFKGVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYY
DTLSSIIDESKVLFYPMDQTLTSMMALGSPEFKNERLFTLRKLLQADDKYIIITTQEGIL
HRQLKPEDYERSVKKISVNQDYDLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIYTH
DYKDPYRLDFFGDTLESIKTFDVQTQKSMNHITSIDIAPLNELFYTDELKEQALEKISKY
FSGFKLSEKEDKKLETDLMHIEERKRMDSLSMYIEFFNDEVTTILDFSNPYDLILVDSYK
MELNEETTYQDLLTYSHTMQGEAFIGLNFKVKLKELLKKNHLSFQIYSVSDKPSTDLGVL
DVDPFVGHLEQLILFINEYNGFNILISTKTMVSFERIKEHLTNHKISYSVNQFKDAMVVL
VEEDLPGSFIDLNHKFIILTEDTILDTKKKAKVRYRSVINQAVKIRDISELQNGDYVVHY
DFGIGQYIGLKTMTLSGDKRDYLHIVYDKDEALYVPTDQIDLVLKYKSYDQVKPKLSKLN
AKQWSKTKAQVKQKIKDLSDRLLNLYAKRHQAEGYQFSPRTDMLTSFEKDFNYDETIDQQ
KAIDAVFEDMESSKPMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAYLVPTTVLARQHY
LTFKDRFEKYGGSVALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLLSDDIVFKDLGLF
IIDEEQRFGVQHKEKIKEIKVNVDTLTLSATPIPRTLQMAMYGLKDLSMIDTPPLNRYPV
QTYVVERQPALIKEAIDRELSRGGQVFYLFNNTERMEAQVLKLQQLVPNARITYAHGKMT
KNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDADHLGLAQLYQLRGRVGRS
DRIAYAYLMFDGYKDVNDEAKKRLSVIEDFTDLGSGFKIALRDLGIRGAGDILGEEQSGF
IDSVGMDLYMKLLDEVMTGKAYESPKTDTVDQVFSKRHIPPTYINHDPVRIEIHKRIASL
NKMQDLEDLKQELLDRFGPIDIDLMTYMYEKLYKKLGHQVGIEKTVHEKDFVKMVISLEK
SELIDGMRLLYVASKSKMNIRLGQSRGHVEINMSTKHETKHWLYLACELLEMYIDSKEIT
INE
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaaatttattaaactccatatataaagatgccgccattttaaacgccagaaca
ggtgattttaaaggtgtatcccatagctatctacagacaatgctttcgcttagatatgat
atttctaataaaaatatttttgtagttttaccaaatctatatgaggcacaaaaatactat
gatacgttatcttctattattgatgaaagtaaagtattgttttatccaatggatcaaaca
ctaacctccatgatggcgttagggtctcctgagtttaaaaacgagcgtctatttacttta
agaaaacttttacaagcagatgataagtatatcatcatcaccactcaagaaggtatttta
cacagacaattaaagcctgaagattatgagcgtagtgttaaaaaaataagtgttaatcaa
gattacgatcttactgaccttacaaaaaaactaatatatgatggctatcagtttaactat
acagtagaacgaccaggcgagttttctattagaggttctatattagatatctatacacat
gattataaagatccttaccgtctagacttttttggtgataccttagaatcaataaagaca
tttgatgtacaaactcaaaaaagtatgaatcatattacatccatagacattgccccatta
aatgaattattttatacggatgaattaaaagaacaggcacttgaaaaaataagtaaatat
tttagtggctttaaattatctgaaaaagaagataaaaagttagaaactgatcttatgcat
attgaagaacgtaaacgtatggatagtctatctatgtatatagagttctttaatgatgaa
gtgacaaccattttagattttagtaacccatatgacttaatacttgttgatagttataag
atggaactgaatgaagaaacaacgtatcaagatttattaacctatagtcataccatgcaa
ggagaggcattcataggtttaaactttaaagtaaaattaaaagaactactgaagaaaaat
catttatcatttcaaatatattcagtatctgataaaccatctactgatttaggtgtttta
gatgtggatccatttgtaggacatttagaacaactgatcttatttataaatgaatataac
ggatttaatatactcatatctactaagactatggtatcttttgaacgtattaaagagcat
ttaacgaatcacaagataagttatagtgtcaaccagtttaaagacgcaatggttgtatta
gtggaagaagatttaccgggatcatttattgatctaaatcataaatttatcatcttaact
gaagatactatcttagatactaagaaaaaagctaaggtcagataccgctcagttattaac
caagccgtaaaaattagagatatctcagaactacaaaatggtgattatgttgtgcactat
gattttggtattggtcaatacattggtctaaagacaatgactttatctggagataaaaga
gattatctacatattgtttatgataaagatgaggcactttatgtaccaacagatcaaatt
gatttagttttaaaatataaaagttatgatcaagttaaacctaaactatctaagttaaac
gctaaacaatggagtaaaaccaaagctcaagtcaaacaaaagattaaagacttatcggat
agactactcaatctttatgccaaaagacatcaagcagaaggatatcagtttagtcctaga
acagatatgttaacttcttttgaaaaagactttaattatgatgaaaccattgaccaacaa
aaagcgattgatgccgtatttgaagatatggaaagttctaaacctatggatagacttatt
gctggggatgttggttatggtaaaacagaagtggcacttcgtgcagcctttaaagctgtt
gtagatgccaaacaagttgcttacctagtaccgactacggtactggctagacaacactat
ttaacctttaaagacaggtttgaaaagtatggtggaagtgttgcactactttctagatat
gttagtaaaagggaacaaaaagaagtgctagaaaaaatagctaagggttatattgatgtc
gttatcggaacacacagattattaagtgatgacattgtctttaaagatttaggtttattt
attatcgatgaggaacaacgctttggggttcaacataaagaaaaaattaaagaaattaaa
gtgaatgtggataccctaactttatctgcaacacctattccaagaacgcttcaaatggcc
atgtacgggcttaaggacctatctatgattgatacaccgcctttaaatagatatcccgta
caaacctatgttgttgaaagacaacctgcattaattaaagaagctattgatagagaacta
tcacgaggtggacaagtattttatttatttaataatacagagcgcatggaagctcaagta
ttaaaactacaacaacttgtaccaaatgcaagaattacatatgcacatggtaagatgacg
aaaaatagaattgaagatacactgtctagattcgttgaaaaagaatttgatattttagtt
tcaacgactattatagaaacaggtgtagatataccaaacaccaatacacttattatccat
gatgccgatcacttaggtcttgcacaactctatcaattacgtggacgtgtaggtagatca
gatagaattgcttatgcgtatttaatgtttgatggctataaagatgtaaatgatgaagcc
aagaaacgtttatctgttattgaagactttaccgatttaggttcagggtttaaaattgca
ctaagagatttaggtattcgtggtgcaggtgatattttaggtgaagaacaatcagggttt
attgattcagtaggtatggacctgtatatgaaacttcttgatgaagttatgacgggtaaa
gcatatgaatctcctaagacagatacggttgatcaagtattttcaaaaagacacataccg
cctacatatattaatcatgacccggtcagaattgaaatacataaaagaattgcttcttta
aataagatgcaagatttagaagatttaaaacaagaattactagatagattcggtccaatt
gatatagatttgatgacctatatgtatgagaaactttataagaagttaggacatcaagtc
ggtattgaaaaaactgtgcatgaaaaagatttcgttaaaatggtcatatccttagaaaaa
agtgaacttatagatggtatgagactactttatgtagcctccaaatctaagatgaatatc
agacttggacaatccagaggacatgttgaaatcaacatgtctactaaacatgaaacaaaa
cactggctatatttagcatgtgaattattagaaatgtatattgactcaaaggagataaca
attaatgagtga
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