Acinetobacter colistiniresistens: NQU59_10635
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Entry
NQU59_10635 CDS
T09040
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acoi
Acinetobacter colistiniresistens
Pathway
acoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NQU59_10635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acoi03400
]
NQU59_10635 (mfd)
Enzymes [BR:
acoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQU59_10635 (mfd)
DNA repair and recombination proteins [BR:
acoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NQU59_10635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UUM26173
LinkDB
All DBs
Position
2237737..2241195
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQQEISQLNLQQFKAGEKRWIGSLMGSSAALLFKEIASQSSNLYVIVARNNQHLAQLES
ELEFYGIKPIIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGILLVSASTLAQRVAPY
SWVVGEHFDIKVGQKLDLEAQKKQLVQAGYRLVDTVYDHGEFAVRGSIMDIFASGQDQPI
RIDLFDDEIESLKFFDPETQRITESLKNFTVLPAKEFPLKEGRSTFRDRYAESFPTANPK
KNPIYQDVLEGIATPGLEFYLPLFFEKKVMEAQSMLTTYLPNNCVVITNSEIEDDLISFW
KEVMRRYEDRRHNIDQPILPPEELFLMPNHVLQALNQFPRILASAEVFETKAGVLNIAAE
QPPKLAVDPKKEQPFEAVKHYIDQAKHPVLLVAESAGRRETLKDALRSVLGEIQNVDSFA
QFQRDKLQVAITSAPLDRGLLLSHQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLEIDEQDHEFLQLDYADGAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDTWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDHTGYMQFAS
GFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAAQNNKQVAVL
VPTTLLAQQHYESFKDRFADTAVRIEVLSRFGSNKTHLKTIEDLAEGKVDIVVGTHKILQ
ENIQFKNLGLMIVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDDSVKEAILRELLRGGQVYLLHNEVDSIERAAETIRNLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDSQEKLDNIRMELIDRFGIPPQPVKQLFSVHQLRLRAEQLGI
TKIDINSNGGYIEFAPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVMVQLAEYDKRIQFI
VELLNKLLSELN
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattaaacttacaacaatttaaagcgggcgaaaaacgc
tggattggttcattaatgggctcatccgcagcattattattcaaagaaattgcttcacaa
agttcaaatctatatgtcattgtcgcaaggaataatcaacatcttgctcagctcgagagc
gaactcgaattttatggtatcaagccgataattttcccagattgggaaatcttgccttat
gatcgtttatctccacatcaagatattgtttctgagcgcttggcaattttatcaaatatg
ccacaaaaagggattttactggtttcagccagtactttagcgcaacgcgttgcgccttat
tcgtgggtggtgggcgaacactttgatattaaagtaggacagaaacttgaccttgaagcg
caaaagaaacaattggttcaagcaggctatcgcttagttgacacggtttatgatcacggt
gaatttgcagttcgcggtagcatcatggatatttttgcatctggacaagatcaaccgatt
cgaatcgatttatttgatgatgaaattgaaagcctaaaattctttgacccagaaacacaa
agaatcacagaatccttaaaaaactttactgttttacctgcaaaagaatttccactcaaa
gaagggcgttctacctttagagaccgctatgcagaaagcttcccaactgcaaatcccaag
aaaaatccgatttatcaggatgtattagagggaattgcaacgccaggtttagaattttac
ttgccattattctttgagaagaaggtgatggaagcacaaagtatgttgacgacatactta
ccaaataattgcgttgtcattacaaatagtgaaattgaagatgatttaatcagcttctgg
aaagaagtaatgcgtcgttatgaagatcgacgtcataacattgatcaaccgattctaccg
ccagaagaattatttttaatgcccaaccatgttttacaggcattaaatcaatttcctcga
attttggcttcagcagaagtttttgagaccaaagccggcgtactcaatatcgccgctgaa
caaccgcctaaactggcagttgatccgaaaaaagaacaaccatttgaagcagtaaaacat
tacattgatcaagccaagcatcctgttttattggtggctgagagtgcgggtcgtcgtgaa
actttgaaagatgccctgcgtagtgtgttaggtgaaatccagaacgtagatagttttgcc
caattccaaagagacaagttacaggttgcaattaccagtgcacctctggatcgaggtctg
ttactcagtcatcaattatcggtcatttctgaaaatcagctttatgaacatcgtgtggtg
cagcgtcgccgtaagcgtcagcaagaagtatctgaagagttcttgattcgtagtttaacc
gagctgagtattggtgcacctgtggtgcatattgatcatggtgttggacgctacgcaggt
ttaattactttagaaatcgacgagcaggatcatgagttcttgcagcttgactatgctgat
ggtgcaaaagtttatgtaccagtaaccaatttgcatctgatcagtcgctacagtggcggt
gatccagatctggcaccattgcataaattaggcacagatacgtggagtaaggcaaagcgt
aaagctttagagcaaattcatgatgtggctgccgagttattacatattcaggcacgacgt
caatcaaaaccaggttttgcttttgaactggatcatacagggtatatgcaattcgccagt
ggatttgcttatgaggaaacgcttgatcaggccaatgccattgaagcgaccctacatgat
atgcaacttgccaagccaatggaccgcttggtgtgtggtgatgtgggctttggtaaaacc
gaggttgccatgcgagcggcttttgttgcggcgcaaaataataaacaagttgcagtatta
gtcccaacgacactgttagcccagcaacattatgaatcttttaaagatcgttttgctgat
acggcagtacgcattgaagtattgtctcgttttggcagcaataagactcatttgaaaacc
attgaagacttagccgaaggcaaagttgatatcgtggtgggaacccataagattctgcaa
gaaaatatacagtttaaaaatttgggtttgatgattgttgatgaagaacatcgttttggg
gttcgcgataaagaacggattaaggcactacgtgctgatgtagatatgctgactttaact
gcaacaccaattccacggaccttaaatatggcattttcggggatgcgtgatctttcgatt
atcgcaacaccgccagcacgtcgattagcggtcaaaacctttgtacaagaacatactgat
gattctgttaaggaagcgattctgcgtgagttattacgtggtggtcaggtgtacttattg
cataatgaagtcgatagtattgaacgtgctgccgaaactattcgcaatttagttcccgaa
gcacgcgtggctgtggcacatggtcaaatgcgagaacgtgaacttgagcaggtgatgcag
cagttctatcacaaggaatataacgtgctagtctgttcgaccatcattgaaacaggtatt
gatgtacccaatgccaataccatcatcatcgagcgtgcagataaactggggctggcgcaa
ctgcatcaattgcgtggtcgtgttggacgttcgcatcatcaagcctatgcttatctattg
gttccatcgatcaagcacctcaaaggagatgccgaaaaacgattagatgccattcaacgc
gcttcaactctgggggctggttttatgctggcgacggaagatttggagattcgaggtgcg
ggtgagttattgggtgagcaacaaagtggttcaatgcaggcgattggttatagtctgtat
atggaaatgctagaaaaagcgaccaaagcgattcaaaagggcaagacaccaaactttgat
gcaccgctttccttaactgctgaaatcaacttacatatgcctgccttgatcccagatgat
tatctcggtgacgtgcatcagcgtctgttgttctacaagcgtatcagtaataccgatagt
caggagaagcttgataatatccgtatggagttgatcgaccgttttggtattccgccacaa
cccgtgaagcaattgtttagtgtccatcaactgcgtttgcgtgcagagcagttggggatt
actaagattgatatcaatagtaatggcggttatatcgagtttgctcctgatacacctgtg
caggcaattagcattattcagttgatgcaaaaaaatccaacctactatcgaatggaaggc
ggacaacgcttaaaagtcatggtgcaattggccgagtatgataagcgaattcagttcatt
gttgagctattgaataagttattgagtgagttaaattga
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