Parazoarcus communis: CEW83_04625
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Entry
CEW83_04625 CDS
T05456
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acom
Parazoarcus communis
Pathway
acom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEW83_04625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acom03400
]
CEW83_04625
Enzymes [BR:
acom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEW83_04625
DNA repair and recombination proteins [BR:
acom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEW83_04625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
DUF4217
Glyco_tran_WecG
AAA_30
AAA_16
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AWI74582
UniProt:
A0A2U8GLV9
LinkDB
All DBs
Position
992027..995473
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AA seq
1148 aa
AA seq
DB search
MPRSIDKLLPTVSALALPKAGKRIDLPQLSGSADALVIAQLAGRGRMLAVVTANPLDAQR
LQDEIAWLAPGLRLHLLPDWETLPYDSFSPHQDLISERLSTLYAITRSEADVVLVPASTA
LYRMAPPAFLAAYTFFLKQGEQLDVEQLRMQMAVAGYAHVTQVVSPGEFSVRGGLVDLYP
MGSPLPYRIDLFDDEVESIKTFDPDTQRTVYPVKEIRLLPAREFPLDDKGRSRFRGQFRE
TFEGDPTRATIYKDVSNGIAPAGIEYYLPLFFDEVATLFDYLPADTPVLLHRDVPGAIAE
FWRDTRSRYDLLKGDRTRPVMPPEKLFLSDEAFFVALKDHPRLVLGSSSESPGTPAALPL
PDIAVERKASDPLHKLKAFCAAFDGRVLLLADSPGRRETMAEYLAEYGVRPETSADFDGF
AVSGEAIALGTAPLGAGFILPEARLAIITETELYAATARTRARRDNRKAATMEGWLRDLS
ELKIGDPVVHVSHGIGRYLGLIHMNLGEGDTEFLHLEYNGGDKLYVPVSQLHVITRYAGA
DPENLDLHRLGSGQWEKAKKKAAMQVRDTAAELLSLYAQRAARPGHRFDFKQHDLEAFAE
AFGFETTPDQQAAIDAVVTDMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVL
CPTTLLAEQHYQTFADRFADWPIKIAELSRFKSVKEQTEALLQLGEGKVDIIIGTHRLLQ
KDVVFKRLGLVIIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAMEGLREFSV
IATAPQKRLAIKTFVQRWSKGIVREAVLREFKRGGQVYFLHNEVDTIENMRNDLADLLPE
ARIVVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIIMNRADRFGLAQ
LHQLRGRVGRSHHQAYAYLLTDANAKPSAQAQKRLEAIAMMDELGSGFYLAMHDLEIRGA
GEVLGEHQSGEIQQIGFSLYTEMLKHAVRDLQAGKEPDLSQPLEVVSEINLHTPALLPTE
YCPDVQERLTLYKRLANCEAEEELRDLQEELIDRFGELPPQALALLETHRMRLLLKPWDV
QKLDASDAQISIQFGKAAPIDPVKVIFLIQKDRSTKMAGPDKLIRRASLPDLKQRVKAVR
DLLDAVKA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgccccgctcaatcgacaagctgctgcccaccgtctccgcccttgcattacccaaggcc
ggcaaacggatcgacctgccccaactgagcgggtcggctgacgcactcgtgattgcgcag
ctggcagggcgcggccggatgctggcggtggtgaccgcgaatccgctcgatgcgcagcgc
ctccaggacgaaatcgcatggcttgcgccaggcctgcgcctgcatctgctgccggactgg
gagaccctgccctacgacagtttttcgccccaccaggacctgatctccgaacggctgtcc
accctgtacgcgatcacccgcagtgaggccgacgtcgtcctggtcccggccagcacagcc
ctctatcgcatggcgccgccagcctttcttgcggcctataccttttttctcaagcagggc
gagcagctggacgtcgagcagctgcgcatgcagatggctgtcgccggctatgcgcacgtg
acacaggtcgtgagcccgggcgaattctcggtacgcggcggactggtggacctgtacccg
atgggttcgcccctgccttaccggatcgatctcttcgacgacgaagtcgagagtatcaag
accttcgaccccgacacgcagcgcaccgtgtacccggtcaaggagatccgcctcttgccc
gcgcgggaatttccgctcgacgacaagggtcgcagccgcttccgtggccagttccgcgaa
accttcgagggcgacccgacccgggcaacgatctacaaggatgtctccaacggcatcgcg
ccggcaggcatcgagtattaccttccgctgttcttcgacgaagttgccacgctgttcgac
tacctgcccgcggatacgccggtgctcttgcatcgcgacgtgcccggcgcgattgccgag
ttctggcgcgacacgcgctcacgctacgatctgctcaagggagatcgtacacggccggtg
atgccaccggagaaactcttcctcagtgacgaagccttcttcgtcgcactgaaggatcac
ccccggctggtccttggcagcagcagtgagagccccggcacgccggccgccctgcccctt
cccgacatcgcggtggagcgcaaggccagcgatccgctgcacaagctcaaggccttctgc
gctgcattcgacggtcgggtactgctgctcgcggactcgcccggacggcgcgaaaccatg
gccgaatacctggccgaatatggcgtcaggcccgaaaccagcgccgatttcgacggcttc
gctgtgtccggagaggcgatcgcgctcggcacggcaccactgggtgcgggtttcatcctg
cccgaagccaggctcgccatcattaccgaaaccgagctgtacgccgcgactgcacgcacc
cgtgcccgccgcgacaaccgcaaggccgcaacaatggagggctggctgcgcgatctgtcg
gaactcaagatcggcgatcccgtagtgcacgtttcgcacggtattggccgctatcttggc
ctgatccacatgaacctcggtgaaggggataccgagtttctgcatctcgaatacaacggt
ggcgacaaactctacgttccggtatcgcaactgcacgtcatcacgcgttatgcaggcgct
gacccggagaatctcgacctccaccggctcggttcgggacaatgggagaaggccaagaag
aaggcagcgatgcaggtgcgcgacaccgctgccgaactgctctcgctctacgcccagcga
gctgcccgcccggggcaccgctttgacttcaagcaacatgatctggaagccttcgccgag
gccttcgggtttgaaaccacccccgaccagcaggcggccatcgacgccgtggtaaccgac
atgaagtcgggccgcccgatggatcgcctcgtctgtggcgacgtcggcttcggcaagacc
gaagtcgcgctgcgtgccgcctttatcgcggtcgcggacgggaagcaggtggtcgtcctg
tgcccaaccacgctcctggccgaacagcactaccagaccttcgcagaccgcttcgccgac
tggccgatcaagatcgcagaactgtcgcgcttcaagtcggtcaaggaacagacggaagca
ctgcttcagcttggcgaaggcaaggtcgacatcatcatcggtacgcaccgcctgttgcag
aaggacgtggtgttcaaacgcctcggcctggtgatcatcgacgaagagcaccgttttggt
gtgcgtcagaaggaggccctcaagcagttgcgcagcgaggtcgacatcctcacccttacc
gccaccccgattccgcgtacgctgggccttgcgatggagggattgcgtgagttctcggtg
atcgccaccgcgccgcaaaaacgtctggcgatcaagaccttcgtacagcgctggagcaag
ggcatcgtgcgcgaggcggtgttgcgcgagttcaagcgcggcggtcaggtctacttcctg
cacaatgaagtcgacaccatcgagaacatgcgcaacgacctcgccgacctgctgcccgag
gcccgcatcgtggtcgggcacggacagttgccggagcgcgaactcgagcgcgtgatgcgc
gacttcacccagcagcgagccaacctgttgctgtgcaccaccatcatcgaaaccggcatc
aacatcccgaccgccaacaccatcatcatgaatcgggccgaccgcttcggtctggcccag
ctccaccagctgcgtggccgcgtcggacgcagccaccatcaggcctacgcctacctgctg
accgacgccaacgccaagccgtcggctcaggcacagaaacgtctggaagccatcgcgatg
atggacgagctgggctcgggtttctatctggcgatgcatgacctcgagatccgcggcgca
ggtgaggtgctgggcgaacatcagtccggggagatccagcagatcggcttcagtctctac
accgagatgctcaagcatgcagtccgggatcttcaggcgggcaaggagcccgatctcagc
cagccgctggaagtggtctccgagatcaacctgcacacccccgccctgctccccaccgaa
tattgccctgacgttcaggagcgcctgacgctatacaagcgcctggccaactgcgaggct
gaagaagaactgcgcgatctgcaggaagaactcattgaccgcttcggcgaactcccacca
caggccctcgcgcttctcgaaacccaccgcatgcgccttctgctcaagccctgggacgta
cagaagctcgacgcatccgatgcgcagatcagcatccagttcggcaaggctgcgcccatc
gatccggtcaaggtcatcttcctgatccagaaggaccgcagcaccaagatggccgggccg
gacaaacttatccgccgcgccagcctccccgacctcaaacagagagtgaaagccgtacgt
gatctgctggacgcggtgaaggcttga
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