Adelges cooleyi (spruce gall adelgid): 126839544
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Entry
126839544 CDS
T09500
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03013
Nucleocytoplasmic transport
acoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126839544
03015 mRNA surveillance pathway
126839544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126839544
Enzymes [BR:
acoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126839544
5.6.2.5 RNA 5'-3' helicase
126839544
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126839544
mRNA cycle factors
Common to processing body (P body) and stress granule
126839544
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
AAA_30
AAA_19
Viral_helicase1
AAA_22
AAA_16
SLFN-g3_helicase
ResIII
DEAD
AAA
nSTAND3
PRT6_C
UvrD-helicase
AAA_6
Motif
Other DBs
NCBI-GeneID:
126839544
NCBI-ProteinID:
XP_050430864
EnsemblRapid:
LOC126839544
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MSDPEMDVTTVFARNPRGSLYFFDDFTLFNSTFANNDDDDDDDDVDETEDTECSEDAWPP
SASASRECMYCGLRVVGAAVMCLVCGKWFCNGRNRTAGSHIVHHLVRSKHKQVMTHLAGP
LGRLPLECYECKSKNVFRLGFVTVKGAAAVVLKCRGACTDKKDRYKWRPVIEDHKLVQWI
AVSPTPEQMRAARPVAMADVVSMEEAWNRENEAAMDLGAATAAAAIAEMRQIAKVKAAYA
DGCEYLGVFEPLVQLEADCDKLLKEGQHLKCVLESEMTSATNGKTVIRLRSVPNDIQLRM
CIGEELWLQHSAGDRRGTIIQLSDSYERMITMETKAPVNWPVGTELMVRPVWKRVPFDRM
LYALKKFAYRPNSVSPEIRSALLGRARHRKPSPPPVAGNLRAPGLPELNGPQTNAIRHAL
GQCVSLVHGPPGTGKTVTCATIVYHLAKLGSVLVCAPSNTAADHLTAVIAKTGVRVVRMI
TPSLEAFDSDVSLLCVHNKIIEMEGNDLLKDLQKIKNGESTTGIGLSKYEEKTYRELKMA
AEIICMKKSQVVCTTCSAAGDSRLEGFSFRSVVVDESVQATEPECMIPVVRGARQLVLIG
DQCQLGPVIVSKKACKAGLNQSLFERLIRLGVRPARLEIQYRMHPELSKFPSSYFYDGSL
QNGVRADERSLPSNIRFPWPNPDKPLMFYASTGAEELSPSGTSYLNRWEADYVERIAAAF
LAGGLEPEQIGIITPYEGQRTYLAQTMMSSNHKHPLAASKYVRVEIASVDSFQGREKDLI
IVSCVRSNENQGVGFLNDPRRMNVALTRAKYGLVLVGNPHILCKHPMWHSLLCYYSDNGA
LVEGPLNNMSPANVRLTAKAEPADRRAQSDALRRNRPKPVRRTPQIMGVPESMIFAHTPR
PIG
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatcccgaaatggacgttacgacggtgtttgcgaggaacccgcgcggttcgttg
tactttttcgacgacttcacgttgttcaactcgactttcgccaacaacgacgacgacgat
gacgacgacgacgtcgacgaaacggaagacaccgaatgctccgaagacgcgtggccgccc
tcggcgtcggcgtcgcgcgaatgcatgtattgcgggttgcgcgtcgtcggtgcggcagtc
atgtgcttggtgtgcggcaaatggttttgcaacggccgcaaccggacggccgggtcgcac
atcgtccaccacctggtccggtccaagcacaagcaagtgatgacccacctggccgggccg
ctgggccgtttaccgttggagtgttacgagtgcaagtcgaagaacgtgttccggctgggg
ttcgtcacggtcaagggcgcggccgcggtagtgctcaagtgccggggcgcgtgcacggac
aaaaaggaccggtacaaatggcggccagtcatcgaggaccataagctggtgcagtggatc
gccgtctcgccgacgcccgaacaaatgagggcggcacggccggtggccatggccgatgtg
gtcagcatggaggaggcgtggaatagggagaacgaggccgccatggacttgggagccgcc
accgccgccgcggccatcgccgagatgcgtcaaatagccaaagtgaaagccgcgtacgcc
gacggttgcgagtatttgggggtgttcgagccgctggtccagctggaggcggactgcgac
aaactcctcaaggaagggcagcacctcaagtgcgtgttggagtccgaaatgacgtcggcg
accaacggcaaaaccgttatccgtctgcggtcggtacccaacgacatccagctgcggatg
tgcatcggcgaagaactttggttgcagcattcggccggcgaccgacgcggcaccatcatc
caactatccgacagctacgagcggatgatcaccatggaaaccaaggcccccgtcaattgg
ccggtcggcaccgagctgatggtccggccggtctggaaaagggtgccgttcgaccgcatg
ttgtacgcgttaaagaagttcgcctaccgtcccaacagcgtgtcgcccgaaatacggtct
gcgttattgggacgtgcacgacacagaaagccatcaccgccgccggtcgccggtaacttg
agagcaccgggtctgcccgaactgaatggtccgcaaacgaacgccatccggcacgcactc
ggccagtgcgtttcgctggtacacgggccgccgggcacgggcaagaccgtcacgtgcgcc
accatcgtgtaccacctggccaagctgggctcggtgttggtgtgcgcgccgtccaacacg
gcggccgaccatctgaccgcggtgatcgccaaaacgggcgtgcgggtggtcaggatgata
actccgtcgctggaagctttcgacagtgacgtgtccctactgtgcgtgcacaacaagatt
atcgagatggaaggaaacgacttgctgaaggacttgcaaaagatcaagaacggcgagtcg
acgaccggaatcggattgagcaaatacgaagaaaagacgtaccgggagctcaagatggcg
gccgagatcatttgcatgaagaagtcgcaagtggtgtgtaccacgtgctcggccgccggc
gactcgcggttggagggcttttcgttccggtcggtagtggtcgacgagagcgtgcaagcc
accgaacccgagtgcatgatacccgtggtgcgaggcgcccggcagctggtgctcatcggc
gaccagtgtcagcttggtccggtgatcgtcagcaagaaggcgtgcaaagccggcctgaac
cagtcgctgttcgagcggctcatccggttgggcgtgcgtcccgcccgactggagatccag
taccgcatgcacccggaactgtccaagttcccgtccagctacttctacgacggttcgctg
cagaacggcgtgcgcgccgacgagcggtcgctgccctccaacatcaggttcccgtggccg
aatcccgacaagccgctcatgttctacgcatcgacgggcgccgaagagctgtcgccgtcc
ggcacgtcgtacctgaaccgctgggaggcggactacgtggagcgcatagcggcggcgttc
ctggccggcggactggagcccgagcagatcggaatcatcacgccgtacgaaggccagcgc
acgtacttggcgcaaacgatgatgtcgtcaaaccacaagcacccgctggccgcgtccaag
tacgtccgcgtggagatcgccagcgtcgactcgttccagggtcgcgagaaagacctgatc
atcgtgtcgtgcgtcaggtccaacgagaaccagggcgtgggctttctcaatgacccgcgg
cgcatgaacgtggcgctgacccgggccaagtacgggctggtgttggtgggcaacccgcac
atcctgtgcaagcacccgatgtggcacagcctgttgtgttactatagcgacaacggtgcg
ctggtcgagggcccactgaacaacatgagtccggccaacgtcaggctgaccgctaaggca
gaaccggccgaccggcgcgcgcagtccgacgcgctccgtcgtaaccggcccaaaccggtg
cggaggacgccccagataatgggcgtgcccgagtccatgattttcgctcatactcctaga
ccgattggatga
DBGET
integrated database retrieval system
