Aeribacillus composti: RI196_06755
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Entry
RI196_06755 CDS
T09377
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acop
Aeribacillus composti
Pathway
acop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RI196_06755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acop03400
]
RI196_06755
Enzymes [BR:
acop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RI196_06755
DNA repair and recombination proteins [BR:
acop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RI196_06755
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
PNKP_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WNF34350
LinkDB
All DBs
Position
complement(1368791..1370590)
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AA seq
599 aa
AA seq
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MQPMMPTLSFHIPEGEQWLYEPKYDGFRAILQADEDRISLMSRNGNDLSPSFPEIKHFIE
KQIEKWRPFFPLVLDGELVMLKTAFSADVASLKRKWKRKSDETTETYQLLVFDILLLQGE
VITKKPLSNRKELLSSVFQQLGLPLHVSPENPIPIQMIQAYHQFSQLWEKIVQHEGEGVV
CKHMLSTYENKKRTSQWLKIKNFKEALFFVTGFDSNNGYIHISVHHKGAIVQAGVFSHGM
PDNQKQALLEIIKKKGKKENHLYTIEPAICMKVRFLSIDSGSLREPSFHSFALEHDWTDC
TFLQLKMAEANVKDVAVTHIEKPLWPKYDIQKQDFLLYLLEISDYMLPFLKDRPLTVIRY
PHGLLGEAFFQKNCPDYAPEFIQTKTIDGIHYIICNDKKTLMWLGNQLAIEFHIPFNTWK
EKQPAEIVFDLDPPSKNEFHLAIYAANKLKECLDRFEIASFPKLSGNKGIQVHIPIGTNI
FSYEETRRFTSFFANYLAEQHPNEFTIERLKKKRGSRLYIDFLQHAEGKTIISPYSVRGV
ENGTVAAPLHWNEVNEQLDAESFTMDYCINRVKSGICPMKHYFSIDQHEKIKAIVEHLL
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccgatgatgccgacattatctttccatattccggaaggggagcaatggctatat
gagccaaaatatgatggttttcgcgcgatattgcaagctgacgaagaccgtatttctctc
atgagccgaaatggaaacgatttatccccatcgttcccggaaattaaacattttatcgaa
aaacaaatagaaaaatggcgtcctttttttccgcttgttttggacggagagcttgttatg
ctcaaaacagctttttccgctgatgttgcctctttaaaaagaaaatggaaaagaaaaagc
gatgaaacgaccgaaacatatcagcttctcgttttcgatatacttttgctgcaaggagag
gttataacaaaaaaacccctttccaaccgaaaagaactactatcctccgtatttcaacaa
ctcggtttaccgctgcatgttagtccagagaatccgatcccgatccaaatgattcaagca
tatcatcagttttcccaattatgggaaaaaattgtccagcatgaaggagaaggcgttgtt
tgcaaacatatgttaagcacatatgagaacaagaaaagaacatcacaatggctgaaaatc
aaaaactttaaagaagcgctcttttttgtcactggatttgattcaaacaacggctacata
catatttctgttcatcataaaggagcaattgtgcaagccggcgttttttctcacggtatg
cctgacaaccaaaaacaagcgttgttggagattataaaaaagaaaggaaaaaaggaaaac
cacctatatactatagagccggccatttgcatgaaagtacggtttctttccattgacagc
ggcagtttaagagaaccttctttccattcctttgcattggaacatgattggacagactgc
acttttttgcagctgaaaatggctgaagccaatgtcaaagatgtggctgtcacacatatt
gaaaaacctctttggccgaaatatgatatacaaaaacaagattttttgctttatttattg
gaaatatccgattatatgcttccatttttaaaagaccgccccttaacggtgatccgctat
ccgcacggtttgttgggagaagcattttttcaaaaaaattgtcctgattatgccccggaa
tttattcagacaaaaacaatcgacgggattcattatatcatttgcaatgataaaaaaacg
cttatgtggcttggcaaccagctcgcaattgaatttcatatcccctttaatacgtggaag
gaaaaacagccggcggaaattgtatttgatttagatccgccgtcaaaaaacgaatttcat
ttggctatctatgctgcaaacaagctgaaggaatgtttagatcggtttgagattgcctcc
tttccaaagctttccggaaacaaaggaattcaagttcatattccgatcggcaccaatatt
ttctcatatgaggaaacgaggcggtttacgtcttttttcgctaattatttagccgaacag
catccgaacgaatttacgattgaacgcttgaagaaaaaacggggcagccgcctttatatt
gactttttacagcatgcagagggaaaaacgatcatttcaccttattccgtcagaggagtc
gaaaatggaacggttgccgctccgcttcattggaatgaagtcaatgaacagcttgatgcc
gaatcttttacaatggactactgcatcaacagggtaaaatcaggtatttgtccaatgaaa
cattatttttccatcgatcagcatgaaaaaattaaagccatcgtcgagcatttattatga
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