Aeribacillus composti: RI196_13245
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Entry
RI196_13245 CDS
T09377
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
acop
Aeribacillus composti
Pathway
acop03410
Base excision repair
acop03430
Mismatch repair
acop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RI196_13245 (recJ)
03430 Mismatch repair
RI196_13245 (recJ)
03440 Homologous recombination
RI196_13245 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acop03400
]
RI196_13245 (recJ)
DNA repair and recombination proteins [BR:
acop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RI196_13245 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RI196_13245 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RI196_13245 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WNF32236
LinkDB
All DBs
Position
complement(2715898..2718276)
Genome browser
AA seq
792 aa
AA seq
DB search
MLRSKFRWNRLYRDESNEEAVRALIDSLNITYLTARLLVNRGIQNVEEAKEFLHIKEPSF
HDPFLLDGMERACERIFAAIRAGEKIVVYGDYDADGVSSTAVLLTALKELGANVDFYIPN
RFSEGYGPNEHAFRMIHEKGCRLIITVDTGIAAINEADLAKRLGIDLIITDHHEPGPVLP
DAYAIIHPKLPNSTYPFKELAGVGVAFKMAHALYGKVPESLIEIAAIGTIADLVPLYGEN
RLLAKKGIEKLKTTTRPGINSLLSIAGVDKSSVNEETIGFVLGPRINAAGRLQEADPAVE
LLLTDDKEKADMLAKEIDQLNKQRQKLVQEITDEAIKEIEKNFPIEDNPVLVVAKENWNS
GVIGIVASRLVEKFYRPAIVLSIDRETGLAKGSARSIQGFDLFKNLSECRELLPHFGGHT
MAAGMTLKAEHIDELRQKMIDLANSQLSDEDFIPVKNIECACSLEHVTIKAVEELEKLAP
FGVDNPKPLFLLENVNAADVRKIGVNGNHLKMKIEEKEFELDVVGFGQGELAEEISPFAN
VSIVGELAINEWNYVKKPQLLLQDLAVPAWQLFDWRGSRGTEALLSKLPAEKRLLIAFHE
ESIKLYKDQPYIHEIHIISEIKDYKNIDVSNKYVVFLDMPPAIEFLVSAFEQGMPERIYA
IFYQHADHFFQTMPTREHFKWYYAFLTKKSSFDYKKYGEDLAKYRGWTKETIFFMTKVFF
ELEFVTINNGVITLNKKVKKRDLSESGTYQQKLDQMKLEQQLLYSSYQELKEWFEKAVLK
RDADKFLQVHEW
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgctgagatctaaatttcgttggaatcgtttatatagggatgagtccaacgaagaggct
gttcgagcattaatcgactctttgaatattacatatttgactgctcgattacttgtgaat
cgcggcattcaaaatgttgaagaagcaaaagagtttttacatataaaggaaccttcattt
catgatccttttttgttggatgggatggagcgggcatgtgagcgtatttttgcagcaatc
cgcgctggtgaaaagattgtcgtatacggtgattatgatgcggacggcgtttccagcact
gccgtcctgttgacggcattaaaggaattgggggcaaacgtcgatttttacataccgaat
cgattttcagaaggatacgggccaaacgaacatgctttccgaatgattcatgaaaaagga
tgcaggctgattataacagttgataccggcatcgcggcaatcaatgaagcggatttagcc
aaaaggcttggaatcgacctcattataacagaccatcatgaaccggggcctgttttgcct
gatgcgtatgcgatcattcatccgaaattgccaaattcaacatatccttttaaggagctg
gcaggtgtaggcgttgcttttaaaatggcccatgccctttatggaaaggttccagaatct
ctgatagagatcgcagccattggaacaattgctgatttagtacctctatacggagaaaat
cggcttcttgcgaaaaaagggattgaaaaattaaaaacgacgacaagacctggcataaat
tcgcttctttccattgctggagtggacaaatcttccgtaaatgaggaaacgataggattt
gttttaggaccgagaatcaatgcggcagggaggctgcaagaagccgatcctgccgttgaa
ttgttgttgacagatgataaagaaaaagctgatatgcttgctaaggaaatcgatcaatta
aataagcaaaggcagaagcttgtacaagagataacggacgaagcgattaaggaaattgag
aaaaattttccaatcgaagacaatcctgttttagtcgtcgcaaaagaaaactggaattct
ggagtgatcggaatcgttgcttccagattggtcgaaaaattttaccgtcctgccatcgtg
ttgagcattgatcgtgagacaggtcttgccaaagggtctgcgcgaagcattcaagggttt
gatctatttaaaaacttatcggaatgcagggagcttctccctcattttggaggccatacg
atggctgctggcatgacgctgaaagcagagcatattgacgagctgcgccaaaaaatgatc
gatcttgcaaatagtcagctttcagatgaagattttattcctgtaaaaaacattgaatgt
gcctgttcattggagcatgtcacaataaaagcagtcgaagagctggagaagcttgcccct
ttcggagtcgataatccgaagccgctctttttactagagaatgtcaatgcggcagatgtt
agaaaaattggggtaaacggaaatcatttgaaaatgaagattgaggagaaggaatttgaa
ttagatgtcgtcggctttggacagggagaattggcagaagaaatatctcctttcgcaaac
gtttctattgtcggtgagcttgcgatcaacgaatggaattatgtaaaaaagccgcagcta
ttgcttcaagaccttgccgtgccagcgtggcagctttttgattggcgaggttcaagagga
acggaggctttgctctctaaacttcctgctgaaaaacgattgctgatcgcctttcatgaa
gaatctataaaattatataaagatcaaccgtacattcatgaaattcatataatatcagaa
ataaaggattacaaaaatatagatgtttccaataagtatgttgtatttctcgatatgccc
ccggcaatcgaatttcttgtttcagcatttgagcaaggaatgcctgaaagaatttatgct
attttttatcagcatgcagaccacttttttcaaacaatgccgacaagagagcattttaaa
tggtattacgcattcttaacgaaaaaaagttctttcgattacaaaaaatatggggaagat
ttagccaaataccgtggctggacaaaagaaacgatcttttttatgacaaaggtgtttttt
gaacttgaatttgttacaataaacaatggtgtgattacattaaacaaaaaggtgaaaaaa
cgggatttatcagaatccgggacatatcagcagaagctggatcaaatgaaactggaacag
cagcttctctattcttcttatcaagaactgaaggaatggtttgaaaaggcagtcttgaaa
cgagatgccgataaatttttacaagttcatgaatggtaa
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