Alistipes communis: A5CBH24_05640
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Entry
A5CBH24_05640 CDS
T06592
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acou
Alistipes communis
Pathway
acou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A5CBH24_05640 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acou03400
]
A5CBH24_05640 (mfd)
Enzymes [BR:
acou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A5CBH24_05640 (mfd)
DNA repair and recombination proteins [BR:
acou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A5CBH24_05640 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Methyltransf_28
Motif
Other DBs
NCBI-ProteinID:
BBL03251
UniProt:
A0A4Y1WQ72
LinkDB
All DBs
Position
complement(659384..662722)
Genome browser
AA seq
1112 aa
AA seq
DB search
MTASEQMLALVEGSKNLRRLCREYETESVTVHLKELVGGAFSLYAAATIRRTGGVHVFVA
EDRDAAAYLLNDLYALLDERRILFFPSSYKRSIVYGAEDAQGVVQRTAALNALRTPPAGY
LALCTYPEALAERVVDAEALRRETMTVRAGDHLRPADLVEWLDESGFVRVDFVYEPGQYS
QRGGIVDVFSYVESLPYRFDFFDEEVDSIRRFNISSQLSQDKLQQAEIIPNLNAREGGRV
SLVEAAGDVCYWFFDADYALRRVDDLRRRMLAEADDPAGVDRALTSRRQLLDALAGKRLF
AARDTLAERPATVAVEFRTAPQPSFNKNFELLADDLSAAIQKGYRTYILSENKAQVERLQ
NIFHQVGRGGVVFTPVSLTLHEGFVDHTLRLCCYTDHQLFDRYQRYRINGEIRRDEQMTV
AELNQLKPGDYVVHIDHGVGRFGGLVKINENGRTHEAIKLVYRDGDVLFVNVHSLHRISR
YKSGDGEPPKVYKLGSGAWQKLKAATKKAVKDISRELIALYAKRKASQGFAFSADGYLQH
ELEASFRYEETPDQQAAIEAVKRDMESAEPMDRLVCGDVGFGKTEVAIRAAFKAACDGKQ
TAVLVPTTILALQHYRSFMERLRDFPVKIEYLNRTKSARETKQILADLEAGRIDILIGTH
KMLGKNVRFHDLGLLVIDEEQKFGVAAKEKLTQLSVNVDTLTLTATPIPRTLQFSLMGSR
DLSVISTPPPNRQPIVTESHVFSEEIVRDAVEAELARGGQVYFVHNRVEDLQTVAGLITR
VCPKARVGVGHGKMPAEQLERLVMDFIYGEFDVLVSTTIVENGIDIPNANTIIVDGAQNY
GLSDLHQLRGRVGRSDRKAYCYLLSPPDELLGSDARRRLRAIEEFSDLGSGFNIAMQDLD
IRGAGNLLGAEQSGFIADIGFETYQKIMREAVAELRAEGLDVAGLSDREQEVVEQLRYVE
DAAVEVDVEAELPDSYVSQTAEKLRLYRELDAMRSEEELQRFEQRLVDRFGALPQAAREL
LDVVRLRWEAVRLGMERVKVKNGLMIVHFVGDAASPFYKSEVFSELLRRVTRRPDKFVLK
QHNNRLAMTVRGVTDIAGAWKILKSLYKEQDA
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgagcgagcagatgctggcactcgtcgaggggtcgaagaacctccggcggttg
tgccgcgaatacgaaacggaaagcgtcaccgtccatctcaaggagttggtcggcggggct
ttttcgttgtatgccgcagcgaccatacgccgcacgggcggcgtgcacgtcttcgtcgcc
gaagaccgcgatgcggccgcctatctcctgaacgacctctacgcgctgctggacgagcgg
cgcatcctctttttcccgtcgtcctacaagcggtcgatcgtctacggcgccgaggatgcg
cagggcgtcgtgcagcgcacggcggcgctcaatgcactgcggacgccgccggcgggatac
ctggcgctctgtacctatccggaagcgctggccgaacgggtcgtcgacgcggaggcactg
cggcgcgagacgatgaccgtgcgggcgggcgaccacctgcgccctgccgatctggtcgaa
tggctcgacgagagcggattcgtgcgggtggatttcgtctacgagccggggcagtactct
cagcgcggcggcatcgtcgacgtcttctcctacgtcgagagcctgccctatcggttcgac
tttttcgacgaggaggtcgactcgatccggcggttcaacatttcgagccagctgtcgcag
gacaagttgcagcaggccgagatcattcccaacctcaatgcgcgcgaaggcggacgggtg
tcgctcgtcgaggcggcgggcgacgtgtgctattggtttttcgatgcggattacgccctg
cggcgcgtggacgatctgcggcggcggatgctcgccgaggcggacgatcccgccggcgtg
gaccgtgcgctgaccagccgccggcaactgctcgacgcgctggccgggaagagactcttc
gcggcgcgcgatacgctggccgagcggccggcgacggtcgcggtggagttccgcacggcg
ccgcaaccctccttcaacaaaaatttcgagctgctggccgacgacctttccgccgcgata
cagaaagggtatcgcacctatatattatcggagaacaaggcccaggtcgaacgcctgcaa
aatattttccaccaggtcggccgcggcggggtggtcttcacgccggtgtcgctcacgctg
cacgaggggttcgtcgaccatacgctccgtctctgctgttataccgaccaccagctcttc
gaccgttaccagcgttaccgcatcaacggcgagatccggcgcgacgagcagatgaccgtc
gccgagctgaaccagctcaaaccgggcgattacgtggtgcatatcgatcacggcgtgggg
cggttcggcggtctggtcaagatcaacgagaacgggcgcacgcacgaggcgatcaagctg
gtctaccgcgacggcgacgtactcttcgtcaacgtccattcgctgcaccgcatttcgcgt
tacaagagcggcgacggcgagccgcccaaggtctacaagctgggcagcggcgcctggcag
aagctcaaagcggctaccaagaaagccgtcaaggatatttcgcgcgagctgatcgcgctc
tatgccaagcgcaaggcatcgcagggcttcgccttctcggccgacgggtacttgcagcac
gagctagaagcctcgttccgttacgaggagacgcccgaccagcaggcggccatcgaggcc
gtgaagcgcgacatggagtcggccgaaccgatggaccggctcgtttgcggcgacgtgggc
ttcggcaagacggaggtggcgatccgcgccgccttcaaggccgcctgcgacggcaagcag
accgccgtactggttcccacgaccattctggcgttgcagcactaccgttcgttcatggag
cggctgcgcgactttccggtgaaaatcgaatacctgaaccgtacgaaatcggccagggag
accaagcagattctcgccgatctggaagcgggacggatcgacattctgatcggcacgcac
aagatgctgggcaagaacgtccgcttccacgatctggggcttctggtcatcgacgaggag
cagaagttcggcgtggcggccaaggagaagctcacgcagttgagcgtcaatgtcgacacg
ctcacgctcacggcgacgcccattccgcgtacgttgcagttttcgctcatggggtcgcgc
gacctgtcggtcatctcgacgccgccgcccaaccgccagccgatcgtcacggagtcgcac
gtcttctcggaggagatcgtccgcgatgccgtcgaagcggagctggcgcgcggcgggcag
gtctatttcgtccacaaccgcgtggaggatctccaaaccgtcgcgggcctgattacgcgc
gtctgccccaaggcgcgggtcggggtcggtcacggcaaaatgccggccgagcagctcgaa
cggctcgtcatggatttcatctacggcgagttcgacgtgctggtctcgacgaccatcgtc
gaaaacggcatcgacatccccaacgccaatacgatcatcgtcgacggcgcccagaactac
ggtctgagcgacctgcatcagctgcgcggccgtgtggggaggtcggatcgcaaggcctat
tgctacctgttgtcgccgcccgacgaactgctcggcagcgatgcacggcggcgtctgcgt
gccatcgaggagttctccgacctggggtcggggttcaacatcgccatgcaggacctcgac
atccgcggcgccggcaacctgctgggggccgagcagagcggattcatcgccgacatcggg
ttcgagacctatcagaagatcatgcgcgaagcggtggccgaactgcgggccgagggactc
gacgtggcggggttgagcgaccgcgagcaggaggtcgtcgaacagttgcgctatgtggag
gatgcggccgtcgaggtcgacgtcgaggccgagctgcccgactcctacgtgagccagacg
gccgaaaaactgcggctttaccgcgagctcgacgcgatgcgcagcgaggaggagctgcaa
cggttcgagcagcggctcgtcgatcgtttcggggcgctgccgcaggcggccagggagctg
ctcgacgtggtgcgtctgcgttgggaggcggtgcgtctgggcatggagcgcgtgaaggtc
aagaacgggttgatgatcgtacacttcgtgggcgacgcggcgtcgcccttctacaagagc
gaggtcttctcggagctgttgcgccgcgtgacccgacggcccgataaatttgtgctcaaa
cagcacaataaccgtttggcgatgaccgttagaggggtaaccgacatcgcaggggcatgg
aagatactgaaatcgttgtataaagaacaagacgcgtga
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