Aliiroseovarius crassostreae: K3J57_06355
Help
Entry
K3J57_06355 CDS
T08444
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acro
Aliiroseovarius crassostreae
Pathway
acro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3J57_06355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acro03400
]
K3J57_06355 (mfd)
Enzymes [BR:
acro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3J57_06355 (mfd)
DNA repair and recombination proteins [BR:
acro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3J57_06355 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
AAA_16
AAA_30
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UWP90283
LinkDB
All DBs
Position
1327299..1330745
Genome browser
AA seq
1148 aa
AA seq
DB search
MTHVLLSGAPEGFDAQLVLKELERSGKPVLHVARDDKRMAAMQAALSFFAPDVTVLTLPG
WDCLPFDRVSPNADVSATRMASLAALATGALQGRFVLLTTLNAAMQRLPARDVLAGASFS
ARVDYQLDIDQLRRFLVRMGFTQSPTVMEPGDFAVRGGIIDIFPPGESGPVRLDMFGDVL
DGVRRFDPATQRTTEKLTGIDLAPVSEVLMDEASITRFRQNYRIEFGAAGSDDPLYEAVS
AGRKHQGVEHWLPFFHERLETVFDYLPEASVMLDDQLTPARLARWDGIVDQYETRKIAMS
AKNRMDTVYKPCPPGLLYLDDPAWEEVVKDRRVVQFAALPQATGPGVVDGSGRIGRNFAP
ERQQENVNLFEALTKHIRAKSTTPTVVASYSEGARERLQGLLADEELTGTTLIDDFRDVP
DSGAGVYLAVWPLEHGFETPDLTVISEQDVLGDRLIRAPKRKRRAENFLTEANALSAGDL
VVHVDHGVGLYKGLETITAMGAPHECLLLEYAGGDRLFLPVENIELLSKFGQDTGLLDKL
GGGAWQAKKAKLKERIREIADKLIRLAAERELRKAPVLEAPHHAWEEFSARFPYQETEDQ
LAAIEDVIEDMAMGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGQQVAVIAPTTLLARQH
YKSFSERFRGFPINVGQLSRFVSASEARRTREGMSRGTMDIVVGTHALLAKDVRFENLGL
LVVDEEQRFGVNHKERLKELRSDVHVLTLSATPIPRTLQMSLSGVRDLSIIGTPPVDRLS
IRTYVSEFDSVTLREALLREHYRGGQSFFVVPRIKDLPEIEQFLQNHVPEVSFVVAHGQM
ASGELDDRMNAFYDGKYDVLLATTIVESGIDIPTANTMIIHRADMFGLAQLYQIRGRVGR
SKTRAYAYLTTKPRSPLTATAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLVGEEQSG
QMREVGYELYQQMLEEAIAKIKSGQLEGLSDSDGTWAPQINLGVPVLIPDNYVPDLDVRL
GLYRRLSSLSTKVELEGFAAELIDRFGPLPKEVNTLMLVVRIKGMCKRAGIAKLDGGPKG
ATLQFHNDKFASPKGLVEFIQAQNGLAKVKDNKIVVRRDWRKTSDKIKGAFAIAQDLAIK
VKEAQKSA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgacacatgttcttctgtccggggcccccgaaggctttgacgcccaattggtgctgaaa
gagctggagcgttcgggcaaaccggtgctgcatgtggcgcgcgatgacaagcggatggcg
gcgatgcaggcggcgctgtctttttttgcccccgatgtgacggtgctcaccttgcccggt
tgggattgtctgccctttgatcgggtgtcccccaacgcagacgtgtctgccacgcggatg
gccagcctcgctgcactggccacaggggcccttcagggccggttcgtgcttctcaccact
ttgaatgcagccatgcaacggctgccggcccgcgacgtgctggccggagcgagcttttct
gcacgggtggattatcagctggatatcgaccagcttcgacgttttctggtgcgcatgggc
ttcacccagagccccacggtgatggagccgggggattttgccgtgcgcggcggcatcatc
gacattttccctccgggggaaagcggaccggtgcggctggatatgtttggggatgttctg
gatggcgtgcgccgctttgacccggccacccagcgcacaaccgaaaaactgaccggaatt
gatcttgcccctgtgtccgaagtgttgatggatgaggcctcgatcacccggtttcggcaa
aactaccggattgagttcggcgcagccggctctgatgatcccctttacgaggcggtcagc
gccggacgcaaacatcagggtgtcgaacattggctacccttttttcacgagcggcttgag
accgtgtttgactacctgccagaggcctcggtgatgctggatgaccagttgaccccggcg
cgtctggcgcggtgggacgggatcgtcgaccagtatgaaacccgcaaaattgcaatgtct
gcaaaaaaccggatggatacggtctataagccatgcccgccggggcttctttatcttgat
gatccagcctgggaagaggtcgtcaaagaccggcgggtggtgcagttcgccgctcttccg
caggccacaggaccgggtgtcgtggatgggagcgggcggatcggccgtaatttcgccccg
gaacgccaacaggaaaatgtcaatctgtttgaggcattgaccaaacatatccgggcgaaa
tccaccactccaaccgttgtggccagctattccgaaggcgcgcgtgagcggcttcagggg
cttttggcggatgaggagctgacaggcaccacgctgatcgacgatttccgggacgtgcca
gacagcggtgccggtgtttaccttgcggtctggccgctggaacatgggtttgaaacaccc
gatctgacggtgatctccgaacaggatgtgctgggggatcgtctgatccgcgccccgaaa
cgcaagcgccgggcggaaaactttctgaccgaggcaaatgccctgtctgccggggatctg
gttgtgcatgtggatcacggggtcggcctttacaaggggcttgaaaccatcaccgcgatg
ggcgcccctcatgaatgcctgctgctcgaatatgcggggggggaccgtctgttcctgccg
gttgaaaatatcgagcttctgtccaaattcggacaggacacaggattgctggacaagctg
ggcggcggcgcatggcaggcgaaaaaggccaagctcaaggaacggatccgggagattgcc
gacaagctgatccgtctggcagcagagcgcgaattgcgcaaggcgccggtgctggaagcc
ccgcaccatgcctgggaagaattttctgcccgtttcccctatcaggagaccgaagaccag
cttgccgccatcgaggatgtgatcgaggatatggcgatggggcgccccatggaccggctg
atctgtggggatgtggggtttggcaaaaccgaggtggcgatgcgtgccgcatttgtcgcc
gccatgtccgggcaacaggtggccgtgattgcccccacaaccctgcttgcccgtcagcat
tacaaaagcttttccgaacggttccgcggtttcccgatcaatgtcgggcagctttcacgt
tttgtcagtgcgtcagaggccaggcgcacccgcgaaggcatgtcccgtggcacgatggac
atcgtcgtgggcacccatgctctgcttgccaaagatgtgcggtttgaaaaccttggtctg
ctggtggtggatgaagagcagcgctttggcgtgaaccacaaagagcgtctgaaggagttg
cgctcggacgtgcatgtgctgaccctcagcgcgaccccgatcccgcgcaccttgcagatg
tcgctttccggtgttcgggacctgtcgattatcggcaccccgcccgtggatcgcctgtcg
atccgcacctatgtgtctgagttcgacagcgtgaccctgcgcgaagcccttctgcgcgaa
cattacaggggcgggcagagtttctttgttgtcccgcgcatcaaggaccttcctgagatc
gagcaattcttgcaaaaccatgtgccggaagtgagctttgtggtggcgcatgggcagatg
gcctcgggcgagctcgatgatcggatgaatgcgttttatgatgggaaatatgatgtcctg
ctggccacaacgattgtggagagcggcattgatattccgaccgccaacacgatgatcatc
caccgggccgacatgtttggacttgcccagctttaccagatccggggcagggtggggcgt
tcgaaaacccgcgcctatgcttatctgaccacaaaaccgcgcagcccgttgaccgccacc
gcggaaaaacgtctcagggtgctgggatcgctggatactttgggggccgggttcacgctg
gcctcacaggatctggatattcgcggcgcggggaaccttgttggcgaagaacagtcgggg
cagatgcgggaagtgggctatgagctttaccagcagatgctggaagaggcgattgccaag
atcaaatccggccagcttgaggggctttcggacagtgatggcacctgggccccgcagatc
aacctcggggtgccggttcttatcccggacaattatgtgcccgatcttgacgtccgcctt
ggcctctatcggcgcctgtcttcgctgtcgaccaaggtcgagctggaaggatttgcggcg
gagctgatcgaccgatttggcccgcttccgaaagaagtgaacacgctaatgctggtggtg
cggatcaagggtatgtgcaaacgggcagggattgccaagctggacggcggaccgaaaggc
gcaacccttcagttccacaatgacaagtttgccagtccgaaaggtctggtcgagtttatc
caggcgcagaacgggttggccaaggtcaaggacaacaagatcgtggtgcggcgtgactgg
cgcaagacctcagacaagatcaaaggcgcgtttgcaattgcgcaggatctggcgatcaag
gtgaaagaggcgcagaagagtgcgtaa
DBGET
integrated database retrieval system
