Arthrobacter crystallopoietes: AC20117_07560
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Entry
AC20117_07560 CDS
T05322
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acry
Arthrobacter crystallopoietes
Pathway
acry03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AC20117_07560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acry03400
]
AC20117_07560
Enzymes [BR:
acry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AC20117_07560
DNA repair and recombination proteins [BR:
acry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AC20117_07560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AUI50700
UniProt:
A0A1H1CK97
LinkDB
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Position
1591863..1594406
Genome browser
AA seq
847 aa
AA seq
DB search
MAQTSSSQRQLVTVDGHRLKLTSLDKVIYPETGTIKAEVLDYYSRIAEYLIPHAAHRPVT
RKRWVNGVGTADKPGEVFFQKNLEEHAPSWVKSHAIEHKSGTNVYPMVNDLATLTWLAQI
SALEIHVPQWKFGPRGKMNNPDRLVLDLDPGEGAGLAECAEVARLVRAVLTGMGLDPRPV
TSGSKGIHLYAALDGKQTSEEVSAVAHELARVLEADHKDLVVSDMKKTLRRGKVLLDWSQ
NHWNKTTITPYSLRGRAHPMVAAPRTWEELDDPDLAHLDFLQVLERVGELGDLLEGMGSG
TADEESLAEAMEEAGEQAGEDQTNNDGGARRGGPAHGSDRFTKYRSMRDPAKTAEPVPEA
PPVDRGGNTFVIQEHHARRLHYDFRLEREGVLVSWAVPKGPPTSPGKNHLAVQTEDHPLE
YGSFEGTIAKGEYGAGEVYIWDSGTYDLEKWRDGKEVIVTLHGKEGGGLSKDGGPEAPRR
YALIHTGGEKGENNWLMHLMKDQKPGTYRKGTPHERQGDDLAKEVEPAFIKPMLATQGSA
ADITAEHQWAFEMKWDGIRAIAIIEDRGVRLISRNGNDLTAGYPELADLPDRVHAETAVL
DGEIVALNKAGRPDFGLLQTRMKLTKKREIDQAAARTPVHLMLFDLLQLDGKSLLALEYC
QRREILAQAVDAGGDGHVQVPPDLDTSLQEAVDTSKELGLEGVMAKRVDSTYADGQRSRS
WIKIKNQLTQEVVIVGWRPGKGSRERKIGSLLVAIPDGADLRYLGRVGSGLTERDLAAVG
ARLKKMARKTPPLDDVPAADASDAHWVRPALVGEVQFSERTEAGKLRHPVWRGFRPDKKP
SDVVVEV
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggcccagacaagctccagccagcgccagctggtcacggtggacggacaccggctgaag
ctgacgagcctggacaaggtgatttaccccgaaaccgggaccatcaaggccgaagtgctg
gactattactcgcggatcgccgagtacctcattccgcatgccgcgcaccggccggtcacc
cgcaagcgctgggtcaacggggtgggcacggcggacaaacccggggaggtgttcttccag
aagaacctggaggaacacgccccgtcctgggtcaagagccacgcgatcgagcacaagagc
gggaccaatgtgtacccgatggtcaacgatctggccacgctcacctggctggcgcagatc
tcggcgctggagatccacgtgccgcagtggaagttcgggccgcggggcaagatgaacaat
ccggaccggctggtactggacctggacccgggggagggcgccggcctggccgaatgcgcc
gaggtggcacggctggtccgggccgtgctgaccgggatggggctggatccgcggccggtc
accagcggctccaagggcatccatctgtacgccgcgctggacggaaagcagacctcggag
gaggtgtccgccgtcgcgcacgaactggcgcgcgtgctggaggcggaccacaaggatctg
gtggtcagcgacatgaaaaagacgctgcgccggggcaaggtcctgctggactggagccag
aaccactggaacaagaccaccatcaccccctattcgctgcgcggccgcgcccatccgatg
gtggccgcgccgcgcacctgggaggaactcgacgacccggacctggcgcacctggacttt
ctgcaggtgctggagcgcgtcggcgagctcggggacctgctcgagggcatgggttccggg
accgcggacgaggaatcgctggccgaggccatggaggaagccggggagcaggcaggggag
gaccagacaaacaacgacggcggtgcgcgccgcggcgggccggcgcacggttccgaccgg
ttcaccaagtaccggtccatgcgcgacccggccaaaacggccgagcccgtccccgaggct
ccgccggtggaccgcggcggcaacacgtttgtgatccaggagcaccacgcccggcggctg
cactacgatttccggctggagcgcgaaggggtgctggtgtcgtgggccgtgccgaagggg
ccgcccaccagcccgggcaagaaccatctggccgtccagaccgaggaccacccgctggaa
tacggcagcttcgaaggcaccatcgccaagggcgagtacggcgcgggcgaggtctacatc
tgggactcgggcacctatgacctggagaagtggcgggacggcaaagaggtcatcgtcacc
ctgcacggcaaggagggcggcgggctcagcaaggacggcggacccgaggcgccgcggcgc
tacgccctgatccacaccggcggggaaaagggcgagaacaactggctgatgcacctgatg
aaggaccagaagccggggacctaccggaagggcacgccgcacgagcgccaaggcgatgac
ctggccaaggaggtggagccggcgttcatcaagcccatgctggcaacgcagggctccgcc
gcggacatcaccgctgaacaccagtgggcgttcgagatgaagtgggacggcatccgcgcc
atcgccatcatcgaggaccgtggcgtgcggctgatcagccgcaacggcaacgaccttacc
gccggctacccggaactggcggacctgccggaccgggtgcacgcggaaacggccgtgctg
gacggggaaatcgtggcccttaacaaggccggccgcccggacttcggtctcctgcaaacc
cggatgaagctgaccaagaagcgcgagatcgaccaggccgcagcgcggaccccggtccac
ctgatgctcttcgacctgctgcagctcgacggcaaatcgctgctggcgctggaatactgc
cagcgccgcgagatactggcacaggccgtggatgccggcggcgacggccacgtccaggtg
ccgccggaccttgacacctcgctgcaggaagccgtggacaccagcaaggaactcggcctt
gaaggtgtgatggccaaacgggtagacagtacatacgcggacggacagcgctcaaggagt
tggatcaagatcaagaaccagttgacgcaggaagtggtcatcgtgggctggcgtcccggc
aagggcagccgggaacgcaagatcggctcgctgctggtggccattccggacggcgcggac
ctgcgttacctgggccgcgtcggctccggcctgaccgagcgggacctggcggccgtgggc
gcgcgcctgaagaagatggcccgcaagaccccgccgctggacgacgttcccgccgcggac
gcctcggacgcgcattgggtccggccggccctggtaggcgaggtgcagttcagcgaacgg
accgaggccggcaagctccgccaccccgtctggcgcggcttccggccggataagaaaccg
tccgacgtcgtggtcgaggtctga
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