Arthrobacter crystallopoietes: AC20117_14935
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Entry
AC20117_14935 CDS
T05322
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acry
Arthrobacter crystallopoietes
Pathway
acry03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AC20117_14935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acry03400
]
AC20117_14935
Enzymes [BR:
acry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AC20117_14935
DNA repair and recombination proteins [BR:
acry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AC20117_14935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SLFN-g3_helicase
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AUI51892
UniProt:
A0A1H0ZNR0
LinkDB
All DBs
Position
3176314..3179886
Genome browser
AA seq
1190 aa
AA seq
DB search
MSLNGLRTALAEDKSFERVRLYASRPAGERSEDLQIGAPPGLRAALLAEMVEGQESGVVL
AVTATGRETEDLATALRCYLPAESIEEFPSWETLPHERLSPRSDTVGRRLSVLRRLKYDD
GASPLRVVIAPVRAVLQPLVKGLGELKPVSLKVGDEVSFESVVRQLADAAYARVDMVTHR
GEFAVRGGILDVFPPTEDHPVRIDFFGDEVDQMRWFAVADQRSLSGENVKHPSALYAPPC
RELLITPDVMSRAAKLKSQMPAAADMLEKIAGGIAVEGMESLAPVLVDAMVPFLGELPEG
SLAVVIEPEKVRARAHDLEATNAEFLAAAWATASDGGDAPLDLALQGDLDEASFRSLADT
RTTALDRKVSWWSITSFNPDDETVLDVDSLTVSAREPRGYQGDVAEMMEFIGGRVRDQWR
VVVATEGPGPAQRLAELFHDNDIPATRVDSLEDQPQPGIIEITTASAGKGFVFDGLKLGL
LTEADLLGRTSAAGTRDMRKMPSKRRNAVDPLQLTAGDFVVHEQHGVGKFVELLQRSSGA
GSTKTMREYLVLEYAPSKRGAPGDRLFVPTDQLDQVTRYVGGDAPALSKMGGSDWANTKN
KARKAVKEIAGELIRLYSARMASRGHAFAPDTPWQRELEEAFPYIETPDQLTTINEVKQD
MEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVALLVPTTLLSQQHYETFSERFSG
FPIRVKALSRFQTAKESKETIEGVKNGAVDVIIGTHRLLSKEVDFKDLGLVIVDEEQRFG
VEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGGYTD
KQASAAIRRELMREGQVFFVHNRVSSIDATAARIRELVPEARVEVAHGRMSESKLEQIIV
DFWEKRFDVLVCTTIIETGLDISNANTLIVDRADNYGLSQLHQLRGRVGRGRERAYAYFL
YPAEKPLGEVALERLKAVASHNELGAGMQLALKDLEIRGAGNLLGGEQSGHIQGVGFDLY
IRLVGEAVADYRGEAEEKAAEMKIELPVNAHLPHDYVPGERLRLEAYRKLASATTLEGID
EVVEELTDRYGEPPLPVQNLIAVARFRVGAREVGLTDVALQGNFIKFAPASLPESKTMRL
NRMYPGSQVKPNLDFILIPKPKTSRIGGRDLSDQAVLEWAQGVIDAVFKG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggactgcggaccgccctcgctgaagataagtccttcgagcgggtacgg
ctctacgcgtcccggccggcgggggagcgcagcgaggatctgcagatcggcgcgcccccc
gggctgcgcgcggcgttgctggcggagatggtcgaggggcaggaatccggcgtcgttctt
gcggttaccgctaccgggcgcgagaccgaggatctggccacggcgctgcgctgctacctg
ccggccgagtccatcgaggagttccccagctgggaaacgctcccgcacgagcggctttcc
ccgcgctcggacacggtgggccggcgcctgtccgtgctgcgccggctcaagtacgacgac
ggcgccagcccgctccgcgtggtgatcgctccggtgcgcgcggtgctgcagccgctggtc
aagggcctgggcgagctgaagccggtgtcgctgaaggtgggggacgaggtctccttcgag
tccgtggtccggcagctggccgatgccgcctacgcgcgggtggacatggtcacgcaccgg
ggcgagttcgcggtgcgcggcggcatcctggatgttttcccgcccaccgaggaccatccg
gtgcgcatcgacttcttcggcgacgaggtggaccagatgcgctggttcgcggtggcggac
cagcgcagtctctcgggcgagaacgtcaagcaccccagcgcgctgtacgccccgccgtgc
cgggagctgctgatcaccccggacgtgatgagccgggccgcgaagctgaagtcccagatg
ccggccgcggcggacatgctggagaagatcgcaggcggcattgccgtcgagggcatggag
tcgctggccccggtgctggtggacgccatggttccgttcctgggcgagctgccggaaggc
tccctcgccgtcgttattgagccggaaaaggtgcgcgcccgcgcccacgatctggaagcg
accaacgcggagttcctcgccgcggcgtgggccacagcgtccgacggcggcgacgcgccg
ctggacctggcgctgcagggggacctggacgaggcgagcttccgctccctggcggacacc
cgcaccaccgccctggaccgcaaggtctcctggtggtccatcacctccttcaacccggac
gatgaaaccgtgctggacgtggactcgctgaccgtcagcgcgcgcgagccccgcggctac
cagggcgacgtggcggaaatgatggagttcatcggcggccgcgtccgcgaccagtggcgc
gtcgtcgtcgccaccgaaggccccggccccgcgcagcgcctggccgagctcttccacgac
aatgacatccccgccacccgcgtcgactccctcgaggaccagccgcagccgggcatcatc
gaaattacgacggcgagtgcgggcaaggggttcgtcttcgacgggttgaagctcggtctg
ctcaccgaggcggacctgctcggccggacctcggccgccggcacccgcgacatgcgcaag
atgccctcgaagcgccgcaacgccgtcgatcccctgcagctgactgcgggggacttcgtg
gtgcacgagcagcacggcgtgggcaagttcgtggagctgctgcagcgctcctccggggcc
ggatccaccaagaccatgcgcgaatacctggtgctggagtacgcgccgtccaagcgcggg
gcgccgggggaccggctgtttgtgcccacggaccagctggaccaggtcacccgctacgtc
ggcggcgacgcgcccgcgctgtccaagatgggcggctcggactgggccaacaccaagaac
aaggcgcgcaaggcggtcaaggagatcgccggtgagctcatccggctgtattcggcgcgg
atggcctcgcgcgggcatgccttcgccccggacaccccttggcagcgcgagctggaggag
gcgttcccgtacatcgagacgccggaccagctgactaccatcaacgaggtcaagcaggac
atggagcgcgagatccccatggaccgcctggtctccggcgacgtgggctacggcaaaacc
gagatcgccgtgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtggcgctgctg
gtgcccaccaccctgctctcgcagcagcactacgagaccttctccgagcggttcagcggt
ttccccatccgggtcaaggcgctctcccgtttccagaccgccaaggaatccaaggagacc
atcgagggcgtgaaaaacggcgcggtggacgtgatcatcggcacgcaccggctgctgtcc
aaggaagtggacttcaaggatctgggcctggtcatcgtggacgaggaacagcgtttcggc
gtggagcacaaggaggcgctgaaaaagatgcgcaccaacgtggacgttctggccatgagt
gcgacgccgattccgcgcaccttggagatgtcgcttaccggcatccgcgagacttccact
ttggctacgccgccggaagagcggcaccctgtgctgacctacgtgggcgggtacacggac
aagcaggcttctgctgccatccggcgcgagctgatgcgcgaaggccaagtgttcttcgtg
cacaaccgcgtctcctcgatcgacgcgaccgccgcccgcatccgcgagctggtgcccgag
gcgcgggtggaagtggcccacgggcggatgagcgaatccaagctcgagcagattatcgtg
gacttctgggaaaagcgcttcgacgtgctcgtctgcaccaccatcatcgaaaccggcctg
gacatctccaacgccaacacgctgattgtggaccgggcggacaactacggcctgtcccag
ctgcaccagctgcgcggccgagtgggccgtggccgcgagcgggcctacgcgtacttcctc
tacccggcggagaagccgttgggcgaggtggcgctggagcggctcaaggccgtggcctcc
cacaatgagcttggcgcaggcatgcaattggccctgaaggacctcgagatccgcggcgcc
ggcaacctcttgggcggcgagcaatccggccacatccagggcgtcgggttcgacctttac
atccggctggtcggcgaggccgtcgcggactaccgcggcgaggccgaagagaaggccgcc
gaaatgaagatcgagctgcccgtcaacgcccacctcccgcacgactacgtcccgggggag
cggctgcgtctggaggcctaccgcaagcttgcctcagcgacgacgctggagggcatcgac
gaggtggtcgaggaactgaccgaccgctacggcgaaccgcccttgcccgtgcagaacctt
atcgccgtggcccggttcagggttggcgcccgcgaagtcggcctgaccgacgtggcgctg
cagggcaacttcatcaagttcgcccccgcatccctgcccgagtccaagaccatgcgcctg
aaccgcatgtacccggggtctcaagtcaaacccaacctcgacttcatcctcatccccaag
cccaaaacctcccgcatcggcggccgcgacctctccgaccaagccgtcctcgaatgggcc
caaggcgtcatcgacgcagtgtttaaggggtag
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