Anolis carolinensis (green anole): 100567584
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Entry
100567584 CDS
T01608
Symbol
pcf11
Name
(RefSeq) PCF11 cleavage and polyadenylation factor subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100567584 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acs03021
]
100567584 (pcf11)
03019 Messenger RNA biogenesis [BR:
acs03019
]
100567584 (pcf11)
Transcription machinery [BR:
acs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100567584 (pcf11)
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100567584 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
100567584
NCBI-ProteinID:
XP_008106364
Ensembl:
ENSACAG00000001135
LinkDB
All DBs
Position
3:complement(202082294..202106988)
Genome browser
AA seq
1800 aa
AA seq
DB search
MAWRAANKRPCAPPPEQFHMTQRLEPVGEEGVFRCRGHFVRRRQQRRRRRQRDEAEDELG
EGRRGLIARGGWSRRKGFFGLVCSFFLSSACQPCGRMSSSSSSSSSSASEGPASGGGGED
ACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQTAKAPSSEKLPVMYLM
DSIVKNVGREYLAAFTKNLVATFVNVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVR
VNSVDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPPVPSSTVTTSPVSCSAVSSTPVVP
EVQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSGSSLSPASLKQHA
PQPSHMPVKAPLPACLPPEKNRLSPLHDVKTPSRDPRLNRTSQHSSHSKDQSHRKDFVTN
PVSQTDPKPSKTLQTEKQTTSKQEKQKQSEKLQKKEFVQLDAKSKSKSPSPLQIKLPHSK
DTRNQESESSRVSEISKRDPRLKKHLVEKPDGKDDDAKEKRRSVEKKDKEEHRSASSRNK
IVNGIVQKQDLNTDEVEKQGGKPGRSSNRKRSRSPRSRSPSSHSPKRRDRRSPKRRLRSL
SPSVTKMGKPRQSGPKSHAEDFGPDIRDERSSNKRSLKLELRDSRRPKRIHEDRPQEGMN
QHSSKVTSEPKENLENWQGSKSSKRWKSGWEENKNPQINEEHQSGSKSPHQRHRETWATS
KGITSPRTPKQQHRLSVDANLQIPKELTLANKRELLKKANERLSSGEITQDDFLVLCHKI
HQLFQYQEGKHRCNVWDSPSGEKGVSKKKPLLSESELIYHEHKAKLKRTQVQHSFPRLNM
VDAEDILDYHLKDTFLSAIDTEQTKNKSGGQLGERSRRHSPVGSNRPYSENSQHDGRRRH
DEPNSLKGIRDEQRPTYSEPYKRARYEDTEKSFTESAGSRFEVTDGKQRFSSLLEERVHF
EDSPRHPGTRAGGDGQPTHFDGLVNTNSRIEGPQAQTNVRFEAVLGQPGSKFDGPPVQSG
GKGSLIFDGPPAPMGGSPLHFEGPTGQVGAGMGMQFEDPIGQPGGALRFDGPSGIRFEGQ
PPGVMRFESHGQPGMRLEGPPGQLSDGIRFEGLHDQPPASMRFDSQPSGGMRFEGPHDQL
RFEGPHERPLGPHGPPGGGMRFEGQPRPGLRFEGPHMQPVGLLGQPGGNLRFDAPHGQPM
GPHGQPASGLRFEGPHGQPVGPFGQPGVGPRFEGPLGQTVGPHGQPGMGPRFEGPSIQSG
GMRFEGPIGQTGPRFDGCQSRFDDQPSQPSLLQRLDGLHGPRFGMGPAHQTPIRFDGPPG
HQVQPRFDTSIPQRFEDPAARFDIALGHQGHRIENMANHPASRLEASPFGQTGPYNEPSG
QPPYNGPSQGMPFQRPEQIFDNSQGPNFNGPPIPGAQAFPNTLNRAPGPFYDDGNLQGPQ
YGNFNNMSVGNVQPPQQVPIMSIAASQPVPYGQPQPLLPVHAQNPGSFVQNQPGNVPLSY
PDNHLGQLDVNDLYSKLLSTGILKVLQPDTASPQVSEISTQPVPEEEEEEQDQNEDQDVP
DLTNFVIEDLKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVS
RKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGP
AGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQKTSSFDSTPSPSK
TPVENPLNIMLNIVKQEVQDSCSSPKVKEEPEEKLDECMEESTPLMSAEIKTESEKVESV
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggcgtggcgcgcagcgaacaaaaggccctgcgcccctcccccagaacaatttcatatg
acgcagcggttggagccggtgggagaagaaggcgtttttcgttgccgcggccattttgtg
aggagaagacagcagcgacggcgacggcgacagcgagacgaagccgaggatgagcttgga
gaaggccggaggggtttaatcgcccggggcgggtggagtaggaggaaggggtttttcggc
ctggtctgttccttctttctctcctcggcctgtcagccctgtgggaggatgtcgagcagc
agcagcagtagcagctcctcggcgtcggaagggcctgcttcgggcggaggcggcgaggac
gcctgccgcgactaccagtcgtcgctcgaggacctgaccttcaacagcaagccgcacatc
aacatgctgacgatcctggccgaggagaacgtgcccttcgccaaggacatcgtctcgctc
atcgaggcgcaaaccgccaaggctccttctagtgagaaacttcctgtcatgtaccttatg
gattctattgtcaagaatgttggaagagaataccttgctgcatttactaaaaacttagtt
gcaacatttgttaatgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaa
ttgcgttctacgtgggatgaaattttccctttgaagaaactatatgcacttgatgtccgg
gtgaattcagtagaccctgcttggccaattaagccactaccccctaatgtgaatacttct
agcatccatgtgaatcctaagtttttaaacaaatcgcccgaggaacctcctgtacctagc
tctacagtcaccacttctccagtatcctgttctgctgtgtcctctactccagttgttcca
gaagtacaaaagaatttgactcaagaacaattaatacgacagcagcttctggcaaaacaa
aaacagttgttagaacttcaacagaaaaaattagaactggaactagagcagactaaagca
caactggctgtttctcttagtgggtccagcttgagcccagcatccttgaagcaacatgct
ccacaaccctcacatatgccagttaaagctccccttccggcttgtctgccacctgagaaa
aaccgcctctctccactccatgatgtcaaaacacccagcagagatccacgtcttaataga
acaagtcaacattcttctcattctaaagatcaaagccataggaaagattttgtgacgaat
ccagtcagtcagactgatccaaagccttccaaaactttacagactgaaaaacaaactaca
tcaaagcaagaaaaacaaaaacagagtgagaaattgcagaagaaagagtttgtccaattg
gatgcaaaatcaaaatcaaagtcaccatctcccttgcaaatcaagctgcctcatagtaaa
gataccagaaaccaagaatctgagagtagcagagtatctgaaataagcaagagagatccc
agattaaagaaacatctcgtagagaagccagatggtaaagatgatgatgcaaaagagaag
aggagaagtgttgagaaaaaagacaaagaagaacatagatcagctagtagtagaaataaa
atagttaatggcattgtgcaaaagcaggatctcaatactgacgaggtggagaaacaaggt
ggaaagccaggaaggtcaagtaataggaaaaggtcccgttctcctagatctcgatcacca
tcttcccattctccaaaacgaagagataggagatctcccaaaagaaggcttaggagtctt
tctccttccgtaacaaaaatggggaagccgcgacaatctgggccaaagtctcatgcagaa
gactttgggccagacatacgggatgaaaggagctccaataaaagaagccttaaactggaa
ctcagagactcaaggaggccaaagaggattcatgaagaccgaccacaagagggaatgaac
cagcattcttcaaaagtaacatctgaacccaaagaaaatttggagaactggcaaggttct
aagtcaagcaaaagatggaagtctggttgggaagaaaataaaaacccacaaattaatgaa
gaacatcaaagtggtagtaaatccccacatcagaggcacagggaaacttgggcaactagt
aaaggaatcacatcacctcgtacaccaaagcagcaacatcgactaagtgtcgatgccaat
ttgcagattcccaaagaattgaccttggcaaacaagagagagcttttgaagaaggcaaat
gaacgcctatcttctggtgaaataacacaagatgacttcctggttctgtgtcataagatt
catcagctcttccagtatcaagaaggaaagcacaggtgcaatgtgtgggatagcccatca
ggggaaaagggtgtttcgaaaaagaagcccctgttgtctgaatcggaattaatatatcat
gaacataaagctaaactgaaaaggacacaagttcagcattcttttccaagactcaatatg
gtagatgctgaagacattttagactatcacttaaaggatacatttctttctgcaattgac
actgaacaaacaaaaaacaaaagtggtggtcagcttggagaaagatcaagacgacattcc
cctgttgggagtaacaggccctactcagaaaattcacaacatgatggtcgaaggaggcat
gatgagccaaactctttaaaaggtattcgtgacgagcaaaggcctacatacagtgaacct
tacaagagagcgagatatgaagatacagagaaatcgtttaccgagagtgcaggatcacga
ttcgaggttactgatggaaagcaaagatttagttcattgttagaagagagagttcacttt
gaagactctcctaggcatcctggcacaagggcaggtggagatggacagccaactcacttt
gatgggctggttaatacaaattctagaattgaaggaccacaagcacagacgaatgtaagg
tttgaagcagttctaggccagccaggatcaaagtttgatggacctccagtgcagtctgga
ggtaaaggttctctaatttttgatgggccaccagcaccaatgggaggtagtcccttgcac
tttgaagggcctacaggacaagttggggcaggaatggggatgcagtttgaggatcccata
ggacagccagggggagcactgagatttgatggtccttcaggcataagatttgagggacag
ccgcctggagtgatgagatttgagagtcatggccagccaggaatgaggcttgaaggccca
ccagggcagttatctgatggaatcagatttgagggactacatgaccagcctccagctagc
atgaggtttgatagccagccatcaggtggaatgagatttgaagggccacatgaccagtta
aggtttgaagggcctcatgaacgtcctctgggacctcatggacctccaggtggagggatg
agatttgaagggcaaccaaggcctggattacggtttgaaggaccgcatatgcagccagta
ggtcttcttggccagccaggaggtaatttgcggtttgatgcaccacatggacaacctatg
ggtccacatgggcaaccagcaagtggtctgagatttgaggggccacatggacagccagtt
gggccatttggacagccaggggttggacctagatttgagggacctcttggtcagactgtg
ggcccacatggacagcctgggatgggtccaagatttgaagggccttccatccaatcaggt
ggaatgagatttgaaggtcctattggtcaaacaggcccaagatttgatggttgtcaatca
agatttgatgatcaaccatctcagccatcgcttttgcaaagactggatggattgcatggt
ccaaggtttggaatgggccctgcgcaccaaacgcctattcgatttgatggtccaccaggt
caccaggttcagccacgatttgacacatcaataccccaacgctttgaagatcctgcagca
cggtttgatattgctcttggacatcagggtcatagaattgaaaatatggctaaccatcca
gcctcaagactagaagcttcaccttttggacaaactggcccttacaatgaaccatcaggc
cagcctccctataatgggccatcacaaggaatgccatttcaaagacctgagcaaatattt
gataattctcagggaccaaatttcaatgggcctcctattcctggagcacaggcctttcct
aatactcttaaccgggcacctggaccattttatgatgatggcaaccttcaagggcctcag
tacggaaacttcaataatatgtcagtaggaaatgttcagccacctcaacaggttcctatt
atgtcgattgctgcttctcagcctgtaccttatggtcaacctcaaccactcttaccagtt
cacgcacaaaatcctggaagctttgtccaaaatcaaccaggaaatgtcccactatcttat
cctgataatcatcttggacaacttgatgtaaacgatttgtactcaaaactactatccaca
ggaattctcaaagttttacagccggatacagcttcaccgcaagtcagtgaaatttctact
cagccagttccagaggaggaagaggaagaacaagaccaaaatgaggatcaagatgtccct
gacctcactaattttgtcatagaggacctaaaacagcggtacgacagtgttataaatcgc
ctctatacaggcattcagtgttattcttgtggcatgaggtttacgacgtctcagacagat
gtctatgcagatcacttggattggcattatcggcagaatcgcactgaaaaggatgttagc
cggaaagtcactcacagaagatggtactacagtctaacagactggatagaatttgaagaa
atcgcagatttagaggagcgtgcaaagagtcagttctttgaaaaagtacatgaggaagtt
gtgttaaaaacacaagaagctgctaaagaaaaggaatttcagagtgtccccgcaggccca
gctggagtagatgagagttgtgaaatatgccaggagcaatttgagcaatattgggatgag
gaagaggaggagtggcacctaaaaaatgccatccgtgtagatgaaaagatctaccatccc
tcgtgctatgaagattatcaaaagacctcctcctttgactcgactccctcacccagcaag
acacccgttgaaaacccactaaatattatgttgaatattgtcaaacaagaagtacaggac
tcctgtagcagccccaaagtcaaggaagagccagaggaaaaacttgacgaatgcatggag
gagagcacacctttaatgtctgccgaaattaaaactgaatctgaaaaggttgagtcagtt
taa
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