Actinoalloteichus sp. AHMU CJ021: C1701_04550
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Entry
C1701_04550 CDS
T05306
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acta
Actinoalloteichus sp. AHMU CJ021
Pathway
acta03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C1701_04550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acta03400
]
C1701_04550
Enzymes [BR:
acta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C1701_04550
DNA repair and recombination proteins [BR:
acta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C1701_04550
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AUS77753
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Position
complement(1166557..1167990)
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AA seq
477 aa
AA seq
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MADLDEYRRRRDPRRTPEPVPDHGPLPHGADDVFVVQEHHARRLHWDVRLERNGVLVSWA
VPKGLPAEPGTVRLAVRTEDHPLDYADFEGRIPKGEYGAGEVLIWDRGTYETRKWTDHEV
DVVLHGDRVTGRYVFFGRGGDWMVRRSDPPQDPDRVPVPDDVAPMLATAGTLPSTSEDDQ
WCYEFKWDGARALAEVEGGRLRLRNRRGEDVTATYPELRGLGEQLGSTQVLLDGEIVVLD
QGRPSFALLQRRLHVTGQARTRRLAEEHPATLLVFDLLHLDGRNLFDLPYTRRRALLDEL
APRGPHWQTPPSFSGGGAAVLQVSRERGFEGIVAKHRDSPYRPGRRSPAWTKIKDVRTQE
VVVGGWRPGEGRRSGVLGSLLLGLPGPDGLRFVGSVGSGFSEAELRSLTGTLRELASAKS
PFVGPVPAQRARSALWVEPRLVGEVLFQEWTRDGRLRAPRWRGLRDDKRPAEVTEGA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggccgacctggacgagtaccggcgtcggcgggacccgagacggacgcccgagcccgtc
cccgaccacggccccctcccgcacggcgcggacgacgtgttcgtcgtgcaggaacaccac
gcccgacgcctgcactgggatgtccggctcgaacggaacggggtgctcgtctcctgggcg
gtgcccaagggcttgcccgccgaacccggcaccgtccgactcgccgtgcgcaccgaggac
cacccgctcgactacgcggacttcgagggccgcatcccgaagggggagtacggggccggt
gaggtgctgatctgggacaggggcacctacgagacccggaagtggaccgaccacgaggtc
gacgtggtgctgcacggcgaccgggtgacggggcgctacgtcttcttcggtcgaggcggc
gactggatggtgcgacggagcgacccgccccaggaccccgaccgggtcccggtgcccgac
gacgtggcgccgatgctggccaccgccggcaccctgcccagcacctccgaggacgaccag
tggtgctacgagttcaagtgggacggcgcccgggccctcgccgaggtggagggcggtcgg
ctccggttgcgcaaccgtcgaggcgaggacgtcaccgccacctaccccgagctgcggggg
ctcggggagcagctcggctccacccaggtgctgctcgacggcgagatcgtcgtgctcgac
cagggacgcccgagtttcgcgctgctccaacgtcggctccacgtcaccgggcaggccagg
accaggcgcctcgccgaggaacaccccgccaccctcctcgtcttcgacctcctccacctc
gacggccggaacctcttcgacctgccctacacgcggcggcgggcgctgctcgacgagctc
gccccgcgcggaccccactggcagacacccccgtccttctccggagggggcgccgccgtc
ctccaggtgagcagggaacgggggttcgagggcatcgtcgccaagcaccgagactccccg
taccggccgggccggcgctcaccggcctggaccaagatcaaggacgtgcgcacccaggag
gtggtggtcggcggctggcgtccgggggagggccggcggagcggggtgctgggatcgctg
ttgctcggcctccccggccccgacgggctccgcttcgtcggatcggtcggcagcggcttc
tccgaagccgaactgaggagcctcaccggcacgctgcgcgagctggccagcgcgaagtcc
cccttcgtcggaccggtgccggcccagcgggcccggtccgccctctgggtcgaaccccgc
ctggtcggtgaggtgctgttccaggagtggacgcgggacgggcggctccgggccccccgc
tggcgcggactccgggacgacaaacggccagcggaggtgaccgagggtgcctga
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