Actinoalloteichus sp. AHMU CJ021: C1701_08075
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Entry
C1701_08075 CDS
T05306
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acta
Actinoalloteichus sp. AHMU CJ021
Pathway
acta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1701_08075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acta03400
]
C1701_08075 (mfd)
Enzymes [BR:
acta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1701_08075 (mfd)
DNA repair and recombination proteins [BR:
acta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1701_08075 (mfd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUS78329
LinkDB
All DBs
Position
complement(1947629..1951273)
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AA seq
1214 aa
AA seq
DB search
MCAVPGPLAGLLTTILADAGFRDVVQSAGTPALRLQGPAALRPLVAGALAADDGAKRPVL
LVTTTGREAEESTAVLSDLLGAESVAHLPSWETLPHERLSPRADTVGARLAILRRLAHPE
ESTAGAPRVVVATIRSLIQPLAPNLGELRPVRLRVGEDHDFEEQLVSLAGLAYSRVDMVE
KRGEFAVRGGILDVFPPTEEHPLRVEFWGDEVSEIRPFSVADQRSLPEQRPELTAPPCRE
LLITESVRQRAAALAEEHRGDADLAEMLEKISGGVPCEGMEALIPALCEGELQLLPDLFP
PDTHVVLADPEKIRSRAADLVRTGQEFLEASWNAAGAGGSAPIDLGASAYRDLNEIAEHT
RESGRPWWTLSQLRVDEELESDYRGADPVEEGRPLRLDVRPVDSYRGELDRAFADLRAHA
SAGGAAVLTFPGTGTAQRAAAQLREAEVPVRLAVDGLPEPPAPGVVTVTRASFEDGFVTG
ENGLVLLTEADLTGGRGGTSTRDMRRMPSRRRNAVDPLALKPGDHVVHEKHGIGRYVQMS
QRTVAGATREYLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWAKT
KSRARKAVREIAAELVQLYAARQSAPGHAFNEDTPWQRELEDAFPYTETPDQLAAIDEVK
QDMRRAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFVERM
RSFPVTIKGLSRFTDALDSEQVIAGLADGSVDIVIGTHRLLQTGIRYRDLGLVIVDEEQR
FGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGHY
DDKQVGAAIRRELLREGQVFYVHNRVSTIEKAARRIRELVPEARVVTAHGQMGEDRLEKI
INGFWEREYDVLVCTTIVETGLDISNANTLLVERGDLLGLSQLHQLRGRVGRGRERGYAY
FLYPPEQALTETAHDRLATIAQNSELGSGMAVATKDLEIRGAGNILGAEQSGHIAGVGFD
LYVRLVGEAVAAFRRGSGIDGAGEEEPELPEVRIDLPVTAHLPHDYVPGERLRLEAYRKI
AEAADAEALDAVRAELVDRYGRPPVEVEHLMAVAAFRQLCRDRGVSEVTLQGSSVRFAPM
ELRDSQLVRLRRLHPKATHKAAVRTVSVPRPTEGPAGGRLGAPPLRDLPLLAWCEQFLIS
MTEPRPAASTAGTS
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgccgtgcccggtccactcgctggtctgctcaccaccatcctggccgacgccggg
ttccgggacgtcgtccagtccgccggcacaccggcgttgcgcctccaggggccggctgcc
ctgcgaccgctggtcgcgggagcgctggccgccgacgacggcgccaagcggccggtcctg
ctggtcaccaccacgggccgggaggccgaggagagcaccgcggtgctctccgacctgctc
ggggccgagtccgtggcgcacctgccgtcctgggagaccctgccgcacgaacggctgtcc
ccccgggccgacaccgtcggggcccggttggcgatcctccgcaggctcgcccaccccgag
gagtccacggccggcgcgccgagggtggtggtggcgaccatccgcagcctcatccagccg
ttggcgcccaacctcggtgaactgcgcccagtccgcctccgggtcggggaggaccacgac
ttcgaggaacagctggtctccctggcgggcctcgcctacagccgggtcgacatggtcgag
aagcgcggcgagttcgccgtgcggggcggcatcctcgacgtgttcccacccaccgaggaa
cacccgctgcgcgtcgagttctggggcgacgaggtcagcgagatccgcccgttctccgtc
gcggaccagcgctcgctgccagaacagcgccccgagctcaccgccccgccctgccgggag
ctgctgatcaccgagtcggtgcgccagcgggccgccgcgctggccgaggaacaccggggt
gacgccgacctcgccgagatgttggagaagatctccggcggggtgccctgcgagggcatg
gaagccctcatccccgcgctgtgcgagggcgagctccagctgctgccggacctgttcccc
ccggacacccacgtcgtgctggccgacccggagaagatccggtcccgtgccgccgacctg
gtgcgcaccgggcaggagttcctggaggcctcctggaacgcggccggcgcgggcggtagc
gcccccatcgaccttggcgcctccgcctaccgggacctcaacgagatcgccgagcacacc
cgcgagtccggccgcccctggtggacgctgtcccagctccgggtcgacgaggaactggag
agcgactaccggggcgccgacccggtcgaggagggccgtcccctccgcctcgacgtccgc
cccgtcgactcctaccggggtgagctggaccgcgcgttcgccgacctgcgggcgcacgcc
agcgcgggcggcgccgccgtcctgaccttccccggcaccggcaccgcgcagcgggcggcc
gcccagctgcgggaggcggaggtccccgtgcggttggccgtggacgggctgcccgaaccg
cccgcccccggcgtcgtgaccgtgaccagggcgtcgttcgaggacgggttcgtcaccggc
gagaacggcctggtgctgctcaccgaagccgacctcaccgggggccgaggcggtacctcc
acccgcgacatgcgccggatgccctcccggcgccgcaacgccgtcgacccgctggcgctc
aaacccggcgaccacgtggtccacgagaagcacggcatcggtcgctacgtccagatgtcc
cagcgcaccgtggccggcgcgacccgcgagtacctggtgctggagtacgcgtccagcaaa
cgcggtcaacccggcgaccggctcttcgtgcccaccgaccagctcgacgaggtctcccgg
tacgtcggtggcgagttgccgaccctgaacaagctgggcggctccgactgggccaagacc
aagagccgggcccgcaaggccgtccgggagatcgccgccgagctcgtccagctctacgcc
gccaggcagtccgcccccgggcacgccttcaacgaggacaccccgtggcaacgggagctg
gaggacgccttcccctacaccgagacgcccgaccagctcgccgccatcgacgaggtgaag
caggacatgcgtcgcgcggtgccgatggaccgggtgatctgcggggacgtcggctacggc
aagaccgagatcgccgtgcgcgccgccttcaaggccgtgcaggacggcaaacaggtcgtg
gtgctggtgcccacgacactgctcgcccagcagcacctgaacaccttcgtggaacggatg
cggtccttcccggtgaccatcaaggggctgtcccggttcacggacgcgctggactccgag
caggtcatcgccggtctcgccgacggttcggtggacatcgtcatcggtacccaccggctc
ctccagaccggtatccgctaccgggacctcggtctggtcatcgtcgacgaggagcagcgg
ttcggcgtcgagcacaaggagcacatcaaggcgctgcggacccacgtcgacgtcctcacc
atgtccgccacgcccatcccgaggaccctggagatgagcctggccggtatccgggagatg
tcgaccatcctgaccccgccggaggagcggcacccggtgctcacctacgtgggccactac
gacgacaagcaggtcggggcggcgatccgccgggagctgctgcgggaggggcaggtcttc
tacgtccacaaccgggtgtccaccatcgagaaggccgcccggcgcatcagggaactggtg
cccgaggcacgggtggtgaccgcgcacgggcagatgggcgaggaccgcctcgagaagatc
atcaacggtttctgggaacgcgagtacgacgtcctggtctgcaccacgatcgtcgagacc
gggctcgacatctcgaacgccaacaccctgctggtagagcggggggacctgctcggcctg
tcccaactgcaccagttgcgcggccgggtcggtcggggccgggaacgcggctacgcctac
ttcctctacccgcccgagcaggcgctcaccgagaccgcccacgaccggctcgcgaccatc
gcccagaactcggagctggggtccgggatggcggtggcgaccaaggacctggagatccgg
ggcgcggggaacatcctgggcgcggagcagtccgggcacatcgccggcgtcggcttcgac
ctgtacgtacggctggtgggcgaggcggtggccgcgttccggcgcggctcgggcatcgac
ggcgccggggaggaggagccggaactgcccgaggtgcggatcgacctgccggtgaccgcg
cacctgccgcacgactacgtgcccggtgaacggttgcgcctggaggcctaccgcaagatc
gccgaggcggccgacgccgaggccctggacgcggtgcgcgccgaactggtcgaccggtac
gggcgaccaccggtcgaggtggagcacctgatggcggtggcggcgttccgccagctgtgc
cgcgaccgaggggtctccgaggtgacgctccagggcagctccgtccggttcgcgccaatg
gagctgcgggactcgcagctcgtccggctgcggcggctgcacccgaaggcgacccacaag
gcggcggtgcgcaccgtgtcggtgccccgacccaccgaggggccggccgggggcaggctg
ggcgcgccgccgcttcgcgacctcccgctgctggcctggtgcgagcagttcctgatctcg
atgacggaaccgcgccccgccgcctccaccgccggcacgtcctga
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