Actimicrobium sp. CCC2.4: RHM62_11055
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Entry
RHM62_11055 CDS
T09612
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
actb
Actimicrobium sp. CCC2.4
Pathway
actb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
actb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHM62_11055 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actb03400
]
RHM62_11055 (mfd)
Enzymes [BR:
actb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHM62_11055 (mfd)
DNA repair and recombination proteins [BR:
actb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RHM62_11055 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WPX30806
LinkDB
All DBs
Position
complement(2370462..2373908)
Genome browser
AA seq
1148 aa
AA seq
DB search
MAFQLIQSLPKPGHRFVLPGLHGSSDACVLAQAGAALKAQNKMLAVVVANAADAQRLLTE
IPWFAQEGEAALRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQNGQCDVLIVPATTA
LVRMAPPSFLAAYTFFFKQGEVLDEARLKTQLSLAGYTPVSQVMSPGEYSVRGGLIDLFP
MGSALPYRIDLFGDTIDTIRTFDADTQRSLYPVREVRLLPGREFPMDDLARTAFRGRWRE
IFEGDPSRSSVYKDIGNGIAAAGIEYYLPLFFEDTRTLFDYLPEDTTFALSGDIDGAIGR
FWNDTRSRHNFLKSDRERPILPPDQLFLTDEEFFTRTKSFGRWILRTDDEPSELSAPLPN
IAVNRRSDDPLINLRSYLLYSAKRVMICAETNGRRETLQQYFNEYQLELTPCEGYAGFVA
GSAKLMLGVAPMHAGFELGEALGNVVFITETELYAGSGRRVGHKKQEAATQVESMVRDLS
ELKIGDPVVHSNHGIGRYMGLVSMDLGEGETEFLYLDYAKEAKLYVPVSQLHVISRYSGA
SPEDAPLHSLGSGQWEKAKRRAAQQIRDTAAELLNLYARRALRKGHAFEFSAHDYANFAD
SFGFEETVDQAAAINAVIGDMTSGKPMDRLICGDVGFGKTEVALRATFVAVLGGKQVAIL
APTTLLAEQHAQTFADRFADWPVKIAELSRFRSGKEINTAMKGMADGTLDIVIGTHKLLS
DDVKFERLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSI
IATAPQKRLAIKTFVRSEGESVIREACLRELKRGGQVYFLHNEVDTIENRKQMLEALLPE
ARIGVAHGQMHERELEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDVAGLTKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGA
GEVLGDNQSGEMTEIGFQMYSDMLNLAVRSLRNGKEPDLAAPLASTTEINLHVPALLPAE
YCGDVHERLSLYKRLASCNDADKIDDLQEEMIDRFGKLPEPAKALVETHRLRVLAKPIGI
IKIDAHGEAAQLVFEPNPPIDAMRIISLIQKNRHIKLNGQDKLRITASMPDLAARVLQIK
TTIRALVG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggcattccagctgattcaatcccttccgaaaccgggccaccgcttcgtcctgcccggc
ttgcacggttcttccgatgcatgcgtgctggcgcaagccggcgcggcactcaaagcccag
aacaaaatgctggccgtcgtcgtggctaacgccgccgatgcgcagcgcctgctgaccgag
atcccgtggttcgcgcaagaaggcgaagccgcgctgcgctgccacttgctgccggactgg
gagacgctgccctacgacgcattctcgccgcatcaggacctggtctcggaacggctggcg
acactatacgaagtgcagaacggccagtgcgatgtgttgatcgtgccggccaccacggca
ctggtacggatggcaccgccgtcgttcctggcggcgtataccttctttttcaagcagggc
gaagtgctcgatgaagcccgcctgaaaacccagctgagcctcgccggctacacaccggtg
tcgcaagtgatgtcgcccggcgaatactcggtgcgcggcggcctgatcgacctgttcccg
atgggctcggcgttgccctaccggatcgacctgttcggtgacaccatcgacaccatccgc
accttcgacgccgatacccagcgttcgctgtatccggtgcgcgaagtgcgtctgctgccg
ggccgcgaattcccgatggatgacctcgcccgtaccgcatttcgcggtcgctggcgcgaa
atcttcgaaggcgatccgtcgcgctcgtcggtctacaaggacatcggcaacggcatcgct
gccgccggtatcgagtactacctgccgctgtttttcgaagacacccgcacgctgttcgat
tacctgcccgaagacaccacgtttgcactgagcggcgacatcgatggcgcgatcggtcgc
ttctggaatgacacgcgctcgcgccacaactttctgaagtccgaccgcgaacggccgatc
ctgccgccggaccagttattcctgaccgacgaagaattttttacgcgcaccaagtccttt
ggacgctggattttgcgcactgatgacgagccatccgagctgtcggcgccactgcccaac
atcgccgtcaatcgccgcagcgatgacccgctgatcaacctgcgcagctatctgctgtac
agcgcgaagcgcgtgatgatctgcgccgaaaccaatggccggcgcgaaacgctgcagcag
tatttcaatgaataccagctcgaactgacgccgtgcgaaggctatgccggcttcgtcgca
ggctcggccaaactgatgctgggcgtggcgccgatgcatgccggcttcgagctgggcgag
gcacttggcaatgtggtcttcatcaccgaaaccgagctctacgccggatcgggtcgccgc
gtcggccacaagaaacaggaagccgccacccaggtcgagtcgatggtgcgcgacctgtcc
gaattgaaaatcggcgacccggtcgtgcacagcaaccacggcatcggccgctacatggga
ctggtcagcatggacctcggcgaaggcgaaaccgaattcctgtatctggactatgcaaag
gaagccaaactctatgtgccggtgtcgcaactgcacgtgatctcgcgctattcgggtgcc
tcgccggaagacgcaccactgcattcgctgggctccggccaatgggaaaaagccaagcgc
cgcgcggcccagcaaatccgtgacaccgctgccgaactgctgaacttgtacgcacgccgc
gcactgcgcaagggtcatgcattcgagttttcggcccatgactacgccaactttgccgac
agcttcggcttcgaggaaaccgtcgaccaggccgccgcgatcaacgccgtcatcggtgat
atgaccagcggcaaaccgatggatcgcctgatctgcggcgacgtcggtttcggcaagacc
gaagtcgcattgcgcgcaaccttcgtcgccgtcctcggtggcaagcaggtcgccatcctg
gcaccgaccacgctgctggcagagcagcatgcgcagaccttcgccgaccgcttcgcagac
tggcccgtgaagatcgccgagctgtcgcgtttccgctccggcaaggagataaacactgcc
atgaaaggaatggccgatggcacgctcgacatcgtcatcggcacgcacaagctgctgtcg
gacgacgtcaagttcgagcgcctgggactggtcatcatcgatgaagaacaccgcttcggc
gtgcggcaaaaagaagcgctgaaagccttgcgcgccgaagttgatgtgctgacgctgacg
gccacgccgatcccgcgcacgctcgggatggcgctcgaaggcttgcgcgatttctcgatc
atcgcgaccgcgccgcaaaagcggctggcgatcaagaccttcgtgcgcagcgaaggcgaa
tccgtgatccgcgaagcctgcctgcgcgaactcaagcgcggcggccaggtgtactttctg
cacaatgaagtcgacaccatcgagaaccgcaagcagatgctagaagcgctgctgccggag
gctcgcatcggtgtcgcccacggccagatgcacgagcgagaactcgaaaaagtcatgcgc
gactttgtggctcagcgcttcaatatcctgctttgcaccaccatcatcgaaaccggcatt
gatgtgccgaccgctaacaccatcatcatgcacagggccgacaagttcggcctggcgcag
ctgcatcaactgcgcggccgcgtcggtcgatcgcatcatcaagcgtatgcgtatctgctg
gtgcatgacgtggccggcctgaccaagctggcgcaacgccggctggacgcgatccagcag
atggaagaactcggcagcggtttctatctggcgatgcacgacctcgaaatccgcggtgcc
ggcgaagtcctcggcgacaaccagtccggcgagatgaccgagatcggtttccagatgtat
tcggacatgctcaacctggcggtgcgctcgctgcgtaatggtaaggaacccgacctggcc
gcaccgctggcctcgaccacagaaatcaatctgcatgtgccggcactgttgccggccgag
tattgcggcgatgtgcatgagcggttgtcgctctacaagcgcctggccagctgcaacgac
gccgacaagatcgacgacctgcaggaagagatgatcgaccgcttcggcaagttgcccgaa
ccggccaaagcgctggtagaaacgcaccggctgcgcgtgctggccaagccgatcggcatc
atcaagatcgatgcccacggcgaagccgcgcaactggtgttcgagccgaatccgccgatc
gatgcgatgcgcatcatttcactgatccagaagaaccggcacatcaagctcaatggccag
gacaagctgcgcatcaccgccagcatgcctgaccttgccgcacgcgttttgcagatcaag
accaccatccgcgcgctggttggctga
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