Actinoplanes sp. N902-109: L083_1682
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Entry
L083_1682 CDS
T02655
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
actn
Actinoplanes sp. N902-109
Pathway
actn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
actn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L083_1682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actn03400
]
L083_1682
Enzymes [BR:
actn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L083_1682
DNA repair and recombination proteins [BR:
actn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L083_1682
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Paralog
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Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGL15192
UniProt:
R4L6P9
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All DBs
Position
complement(1833303..1834484)
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AA seq
393 aa
AA seq
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MTTMPELIAPMLAAPGPLPGGAGWAFEFKYDGVRAISYVQPGSVRVLSRNNNDVSTHYPE
LGALSGLLGGRSAILDGEVVALEPGDRPSFARLAGRMHVARPTETLLATVPVVYYVFDLL
WFEGHDLLDQPYGTRRRLLADLGLTGGTIRLPPHFTDVAGGTVLRAAELGGLEGVVAKRL
DSVYRPGRRSDTWTKVPLIRTQEVVVLGWKAGAGRRAGTIGSLLLGVLDDDGALRFAGHV
GTGFTDVMLRRLQEQLTPLERRTPPAPDVPREQARHAHWVEPALVGEVAYRTWTPEGRLR
HASWRGLRTDRHPAEARRWPAPPPPALPEVEKALVTPDGRWRVEIVRGATHYRLAHGDNI
IDGLDLAGVQRLLTRAGVDFADLIEPGSNHSAA
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccatgcccgagctgatcgccccgatgctggccgcgcccggtccgctgccgggc
ggtgccgggtgggccttcgagttcaagtacgacggggtgcgggcgatcagctacgtccag
cccggttccgtacgggtcctgtcgcgcaacaacaatgatgtgagcacccactatcccgag
ctcggcgccttgtccgggctgctcggcggccggtcggcgatcctggacggcgaggtcgtg
gcgctggagcccggcgatcggccctcgttcgcccggctcgccggccgcatgcatgtcgcc
cggcccaccgagacgctgctggcgaccgtgcccgtcgtctactacgtgttcgacctgctg
tggttcgagggtcacgacctgctcgaccagccgtacggaacccgccgccggttgctcgcc
gatctcgggctcaccggcggcaccatccgcctgcccccgcacttcaccgatgtcgcgggc
gggaccgtcctgcgggcggccgagctgggcggtctcgaaggggtcgtcgcgaaacggctg
gactcggtgtaccggcccgggcggcgttccgacacgtggacgaaggtgccgctcatccgt
acccaggaggtcgtggtcctggggtggaaggcgggcgcgggccgccgggccggcaccatc
gggtcgctgctgctcggggtcctcgacgacgacggcgcgctccggttcgcggggcatgtc
ggcaccggcttcaccgacgtcatgctgcgccggctccaggagcagctcaccccattggaa
cgccgcacaccaccggcccccgacgtgccccgcgagcaggcccggcacgcccactgggtg
gagcccgcgctggtcggcgaggtggcctatcgcacctggacccccgagggccggttgcgg
cacgcatcctggcgcggcctgcgcaccgaccgccaccccgccgaggcccgccggtggccc
gcgcccccgccaccggcgctgcccgaggtggagaaggccctggtgaccccggacggccgc
tggcgcgtcgagatcgtccgcggcgccacgcactaccgcctggcccacggcgacaacatc
atcgacggcctcgacctggccggggtgcagcgcctgctcacccgcgccggcgtcgacttc
gccgacctgatcgaaccgggcagcaatcactcggcagcctag
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