Actinoplanes sp. NBRC 14428: Asp14428_36900
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Entry
Asp14428_36900 CDS
T08315
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
actr
Actinoplanes sp. NBRC 14428
Pathway
actr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
actr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Asp14428_36900 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actr03400
]
Asp14428_36900 (mfd)
Enzymes [BR:
actr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Asp14428_36900 (mfd)
DNA repair and recombination proteins [BR:
actr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Asp14428_36900 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
DUF3646
RecG_dom3_C
UB2H
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BCJ52215
LinkDB
All DBs
Position
complement(3951958..3955596)
Genome browser
AA seq
1212 aa
AA seq
DB search
MQLSGLVPAALRDRGLARARDLARKGGVDSDALDLTAPASLRPFVVAAVAGPAGIGGAGR
PVLAVTATSREADDLADALGCLISADGVAVYPSWETLPHERLSPRSDTVGRRLAVLRRLA
HPAEAGSAPLQVVVAPVRSLLQPQLKGLGDLEPVELRPGGAAELEQVARRLSDMAYARVD
LVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIDPAERLWAPPC
RELLLTPQVRARAAELSEQHPELAEILDKLAEGIPVEGMESLAPALLQGTDSMELLIDCM
PAGTHVLLCDPERIRTRAHDLTRTSDEFLEAGWAAAAVGGQAPIDVGAAAFRTLGDVRAH
AATLHQPWWTVSPFGLADADEQPDAGLPWLETPSVEVSPDAGDAVSLKAQPVPLYHGDTA
RLAADLRQWTGDRWAVALVFEGHGTAQRATELLRDAGLGVTPVDSIATAVEPGQLLVTCG
GLNHGFVDEVSRLAVITGNDISGGRGASTKDMRKMPSRRRNTIDPLELKPGDFVVHEQHG
IGRYVELVQRTVNGADREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGESPTLHKM
GGSDWQKSKARARKAVREIAAQLIQLYAARQASQGHAFGPDTPWQRELEDAFPYTETPDQ
LAAIHEVKHDMELAVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAILVPTTLLVQQH
YNTFAERMSQFPVNIKQLSRFQTPKEAALALEQAADGTADIVIGTHRLLANSTRFKNLGL
IIVDEEQRFGVEHKEQLKALRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHP
VLTFVGAQDDKQVAAAIHRELLRDGQVFYLHNRVESIDRAARKLRELVPEARIAVAHGQM
SEEQLEKVMVGFWEKEFDVLVCTTIVESGIDIANANTLIVERADLLGLSQLHQIRGRVGR
GRERAYAYFLYPREKPLTEQAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSG
HIEGVGFDLYVRMVGEAVQAFKGERPEEEPEVKVDLPIDAHLPTDYIAVERLRLEMYRKL
AEARDGVRLDEVVAEMTDRYGEPPEQVVNLIAVARFRLVARAYGLTDVSMQGKHLRFSPL
PLPDSKQLRLKRYHPDSVYKTTNDQVSVPRPATRRVGGEPLRDQALLQWCTQLLKDVLGD
IPAPVPGVASGA
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcagtggcctcgtcccggccgccctgcgtgaccgcgggctggcccgggcccgc
gacctggcccgcaagggcggggtcgactccgacgctctcgacctgaccgcgcccgcctcg
ctgcgcccgttcgtcgtcgccgcggtggccggcccggccgggatcggcggagccggcagg
cccgtgctcgccgtgaccgccaccagccgggaggccgacgacctcgccgacgcgctgggc
tgcctgatctcggcggacggcgtcgccgtctacccgtcctgggagacgctgccgcacgag
cgcctgtccccgcgctcggacacggtcgggcgccgcctcgccgtgctgcgccgcctcgcc
catcccgccgaggcgggctccgcgccgctgcaggtcgtcgtcgcgccggtccggtcgctg
ctccagccgcagctcaaggggctgggcgacctcgagccggtcgagctgcggccgggcggg
gcggcggagctcgagcaggtcgcgcggcggctgtccgacatggcgtacgcccgcgtcgac
ctggtcaccaagcgcggggagttcgccgtgcgcggtggcatcctcgacgtcttcccgccg
accgacgagcacccgtcccgggtcgagttctggggcgacgaggtggaggagatccgcacc
ttcgccgtcgccgaccagcgcacgatcgaccctgccgagcggctctgggcgccgccgtgc
cgcgagctgctgctcaccccgcaggtgcgggcccgcgccgcggagctgtccgagcagcac
cccgagctcgccgagatcctcgacaagctcgccgagggcatcccggtcgagggcatggag
tcgctggctccggccctgttgcagggcacggacagcatggagctgctgatcgactgcatg
ccggccggcacccacgtgctgctctgcgacccggaacggatccgcacccgggcgcacgac
ctcacccggacgtccgacgagttcctcgaggccggctgggccgccgcggccgtgggcggc
caggcgccgatcgacgtcggcgccgccgcgttccggaccctcggcgacgtccgcgcccac
gcggcgacgctgcaccagccgtggtggacggtctcgccgttcggcctggccgacgccgac
gagcagcccgacgccggcctgccctggctggagacgccgtcggtcgaggtcagccccgac
gccggcgacgccgtctcgctgaaggcccagccggtgccgctctaccacggcgacaccgcc
cggctcgccgctgacctgcggcagtggaccggcgaccggtgggccgtcgcgctcgtcttc
gagggccacggcaccgcccagcgcgccaccgagctgctgcgcgacgccggcctcggcgtc
accccggtcgactccatcgccaccgcggtcgagcccggccagctgctcgtcacctgcggc
ggcctcaaccacggcttcgtcgacgaggtctcccggctcgccgtcatcaccggcaacgac
atcagcggcggacgcggcgcgtccaccaaggacatgcgcaagatgccgagccggcgccgc
aacacgatcgacccgctggagctcaagcccggcgacttcgtggtgcacgagcagcacggc
atcggccgctacgtcgagctggtgcagcgcacggtcaacggcgccgaccgcgaatacctg
gtgatcgagtacgcccccagcaagcgcggccagcccggcgaccggctcttcgtccccacc
gaccagctcgaccagctctcccgctacgtcggcggagagtcgcccaccctgcacaagatg
ggcggctccgactggcagaagagcaaggcccgggcccgcaaggccgtccgggagatcgcc
gcccagctcatccagctgtacgcggcgcgccaggcgtcccagggtcacgcgttcgggccg
gacacgccgtggcagcgcgagctcgaggacgcgttcccgtacaccgagacgcccgaccag
ctggcggcgatccacgaggtcaagcacgacatggagctggccgtaccgatggaccgcctg
atctgcggcgacgtcggctacggcaagaccgagatcgccgtccgggccgccttcaaggcg
gtccaggacggcaagcaggtggccattttggtgcccaccacgctgcttgtccagcagcac
tacaacacgttcgccgagcggatgagccagttcccggtcaacatcaagcagctgtcccgc
ttccagacgcccaaggaggcggcgctggcgctggagcaggccgccgacgggaccgccgac
atcgtcatcggcacccaccggctgctcgccaactcgacccgcttcaagaacctcggcctg
atcatcgtggacgaggagcagcgcttcggcgtcgagcacaaggagcagctcaaggccctg
cgcgcctcggtcgacgtgctgaccatgtccgccacgccgatcccgcgcaccctggagatg
gcgatcaccggcatccgcgagatgtcgaccatcgccaccccgccggaggagcggcacccg
gtgctcaccttcgtcggtgcccaggacgacaagcaggtggccgcggccatccaccgcgag
ctgctgcgcgacggccaggtcttctacctgcacaaccgggtcgagtcgatcgaccgggcc
gcccgcaagctccgcgagctggtgccggaggcgcggatcgcggtcgcgcacgggcagatg
agcgaggaacagctcgagaaggtgatggtcggcttctgggagaaggagttcgacgtcctg
gtctgcacgaccatcgtcgagtccggcatcgacatcgccaacgcgaacaccctcatcgtc
gagcgggccgacctgctcggcctctcccagctgcaccagatccgcggccgggtcgggcgg
ggccgcgagcgggcgtacgcctacttcctctacccgcgcgagaagccgctgaccgagcag
gcccacgagcggctcgccaccatcgcccagcacaccgagctcggcgccggcatgtacgtg
gcgatgaaggacctcgagatccgcggcgcgggcaacctgctcggcggcgagcagtccggc
cacatcgagggcgtcggcttcgacctgtacgtccgcatggtcggcgaggcggtgcaggcg
ttcaagggcgagcggcccgaggaggagccggaggtcaaggtcgacctgccgatcgacgcg
cacctgccgaccgactacatcgcggtggagcggctgcgcctcgagatgtaccgcaagctg
gccgaggcccgcgacggcgtacgcctcgacgaggtcgtcgccgagatgaccgaccgatac
ggcgaacccccggagcaggtggtgaacctcatcgcggtcgcacgcttccggttggtggcg
cgcgcgtacggcctcaccgacgtctcgatgcagggcaagcacctgcggttctcgccgctg
ccgctgcccgactcgaagcagctgcggctcaagcgctaccacccggactccgtctacaag
acgaccaacgaccaggtcagcgtgccgcggccggccacccgccgggtgggtggcgagccg
ctgcgcgatcaggcgctgctgcagtggtgcacgcagctgctcaaggacgtattgggtgac
attccggcccccgtgccgggggtcgcatccggagcgtga
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