Actinoplanes sp. SE50: ACWT_0810
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Entry
ACWT_0810 CDS
T05392
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acts
Actinoplanes sp. SE50
Pathway
acts03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACWT_0810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acts03400
]
ACWT_0810
Enzymes [BR:
acts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACWT_0810
DNA repair and recombination proteins [BR:
acts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACWT_0810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ATO80225
LinkDB
All DBs
Position
922041..925652
Genome browser
AA seq
1203 aa
AA seq
DB search
MQLAGLIPAALRDRGLARARDLARKGFVDSDSMDLTAPVSLRPFVVATVAGPADAGGAQR
PVLAVTATSREADDLADALGCLIEPGRVAVYPSWETLPHERLSPRSDTVGRRLAVLRRLA
HPGDQPLQVVVAPVRSLLQPQLKGLGDLEPVELVTGREAELEGVARRLSDMAYARVDLVT
KRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEQVERLWAPPCREL
LLTPAVREKAALLATRHPELAEILDRLAEGIPVEGMESLAPALLDGTDSMELLIDCMPAG
THVLLCDPERIRTRAHDLTRTSDEFLEASWAAAAVGGEAPIDVGAVAFKTLADVRAHAAV
LHQPWWTLSPFGLATADEPAAALPWEDAGTVEVSPDTGDAVALAAQPVPLYHGDTERLAA
DLAGWSAAGWAVALVFEGKGTAQRATELLRDAGLGVTPVDSIATPIADGQLLVTCGGLNH
GFVDEASRLAVITGNDISGGRGASTKDMRKMPARRRNTIDPLELKMGDFVVHEQHGIGRY
IELVQRTVNGADREYLVIEYAASKRGQPGDRLYVPTDQLDQLSRYVGGEQPTLHKMGGAD
WQKSKARAKKAVKEIAAQLIQLYAARQASKGHSFGPDTPWQRELEDAFPYTETPDQMAAI
IEVKHDMELQTPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHYNTF
TERMSQFPVQIRQLSRFQTPKEAALTLENAADGTADIVIGTHRLLSKSTRFKNLGLIIVD
EEQRFGVEHKEQLKALRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPVLTY
VGAYDDKQVAAAIHRELLRDGQVFYLHNRVESIDRAARRLRELVPEARVAVAHGQMSEEQ
LEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLILERADLLGLAQLHQIRGRVGRGRER
AYAYFLYPREKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEG
VGFDLYVRMVGEAVSAFKGERPEEEPEVKIDLPIDAHLPTDYIAVERLRLEMYRKLAEAR
DDARLDEVVAEMTDRYGEPPAAVVNLIAVARFRQLARAYGLTDVSMQGRHLRFAPLALPD
SKQMRLKRYHPDSVYKPANDQVSVPRPQTRRVGGEPLRDQDLLQWCAQLLKDVLGDAPAP
ARV
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcgccggactcatcccggccgccctgcgcgaccgcggcctcgcccgggcccgt
gacctggcccgtaagggcttcgtcgactcggactcgatggatctgaccgcgccggtctcg
ctgcggccgttcgtggtggccaccgtggccggtccggccgacgccggcggggcgcagcgg
ccggtgctcgcggtcaccgccacctcgcgcgaggccgacgacctggccgacgcgctgggc
tgcctgatcgagccgggccgggtggcggtctacccgtcgtgggagacgctgccgcacgag
cggctgtcgccccggtccgacacggtcggccggcggctggccgtgctgcgccgcctggcc
caccccggtgaccagccgctgcaggtggtcgtggcgccggtccgctcgctgctgcagccg
cagctcaagggcctcggcgacctggagccggtggagctggtcaccgggcgggaggcggag
ctggagggggtcgcgcggcggctctccgacatggcgtacgcccgggtcgacctggtgacc
aagcgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgccgaccgacgag
catccgtcccgggtcgagttctggggcgacgaggtggaggagatccgtaccttcgcggtc
gccgaccagcgcaccatcgagcaggtcgagcggctgtgggcgccgccctgccgggagttg
ctgctcacccccgcggtccgggagaaggcggcgctgctcgccacccggcacccggagctc
gccgagattctcgaccggctggccgagggcatcccggtcgagggcatggagtcgctggcg
ccggcgctgctggacggcaccgacagcatggagctgctgatcgactgcatgccggccggc
acccacgtgctgctctgcgacccggagcggatccgcacccgggcacacgacctcacccgc
acctccgacgagttcctggaggcctcctgggccgcggccgcggtcggcggtgaggcgccg
atcgacgtgggtgcggtcgccttcaagaccctcgccgacgtgcgggcccacgccgccgtc
ctgcaccagccgtggtggacgctctcgccgttcggcctggccaccgccgacgagccggcc
gccgcgctcccgtgggaggacgccgggacggtcgaggtctcgccggacaccggtgacgcg
gtggcgctggccgctcagccggtcccgctctaccacggcgacaccgagcggctggccgcc
gacctggccggctggtccgccgcgggctgggcggtcgcgctggtcttcgagggcaagggg
accgcccagcgggccaccgagctgctccgggacgcgggcctcggggtcaccccggtcgac
tcgatcgccaccccgatcgccgacggccagctgctggtcacctgcggcgggctgaaccac
ggcttcgtcgacgaggcgtcccggctcgcggtgatcaccggcaacgacatctccggcggg
cgcggcgcctccaccaaggacatgcgcaagatgccggcccgccggcgcaacacgatcgac
ccgctggaactcaagatgggcgacttcgtggtgcacgagcagcacggcatcggccgctac
atcgagctggtccagcgcacggtcaacggcgccgaccgggagtacctcgtgatcgagtac
gccgcgtccaagcgcggccagcccggcgaccggctctacgtccccaccgaccagctggac
cagctgtcccgctacgtcggcggtgagcagcccacgctgcacaagatgggcggcgccgac
tggcagaagagcaaggcccgcgccaagaaggcggtcaaggagatcgccgcccagctgatc
cagttgtacgcggcgcggcaggcctccaagggccactccttcggcccggacacgccgtgg
cagcgcgagttggaggacgccttcccgtacaccgagacgcccgaccagatggccgcgatc
atcgaggtcaagcacgacatggagttgcagacgccgatggacaggctgatctgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgcgccgcgttcaaggcggtccaggacggc
aagcaggtggccgtgctggtgcccaccacgctgctcgcccagcagcactacaacacgttc
accgagcggatgagccagttcccggtgcagatcaggcagctgtcccggttccagacgccc
aaggaggcggcactcaccctggagaacgccgcggacggcaccgccgacatcgtgatcggc
acgcaccggctgctgtccaagtcgacccggttcaagaatctgggcctgatcatcgtcgac
gaggagcagcgcttcggcgtcgagcacaaggagcagctcaaggcgctgcgcgcgtcggtg
gacgtactgaccatgtcggccaccccgatcccgcgcaccctggagatggcgatcaccggc
atccgggagatgtccaccatcgccaccccgccggaggagcggcacccggtgctcacctac
gtcggggcgtacgacgacaagcaggtcgccgccgccatccaccgcgagctgctccgcgac
ggccaggtgttctacctgcacaaccgggtcgagtcgatcgaccgggcggcccgccggctg
cgcgagctggtgcccgaggcgcgggtcgcggtggcgcacggccagatgagcgaggagcag
ctggaaaaggtcatggtcggcttctgggagaaggagttcgacgtcctggtctgcaccacg
atcgtcgagtccggcatcgacatcccgaacgccaacaccctgatcctggagcgcgccgac
ctgctcggcctggcccagctgcaccagatccgcggccgggtcggccgcgggcgggagcgg
gcgtacgcgtacttcctctacccccgggagaagccgctcaccgagcacgcccacgagcgg
ctggccaccatcgcccagcacaccgagctcggcgccggcatgtacgtcgcgatgaaggac
ctggagatccgcggcgccggcaacctgctcggcggcgagcagtccggccacatcgagggc
gtcggcttcgacctgtacgtgcggatggtcggcgaggcggtcagcgcgttcaagggcgag
cggcccgaggaggagcccgaggtcaagatcgacctgccgatcgacgcgcacctgcccacc
gactacatcgcggtcgagcggctgcgcctggagatgtaccggaaactcgccgaggcccgc
gacgacgcccggctggacgaggtcgtcgccgagatgaccgaccggtacggcgagccgccc
gccgcggtggtcaacctgatcgcggtggcccggttccgccagctcgcccgggcgtacggc
ctgaccgacgtgtcgatgcagggtaggcacctgcggttcgccccgctcgcgctgcccgat
tccaagcagatgcggctcaagcggtaccacccggactcggtctacaagccggcgaacgac
caggtcagcgtgccgcggccgcagacccggcgggtcggcggcgagccgctgcgcgaccag
gatctgctccagtggtgtgcccagctgctcaaggacgtgctcggtgacgcgccggccccg
gcccgggtgtga
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