Agrobacterium cucumeris: KZ699_23050
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Entry
KZ699_23050 CDS
T09081
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acuc
Agrobacterium cucumeris
Pathway
acuc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KZ699_23050 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acuc03400
]
KZ699_23050 (ligD)
Enzymes [BR:
acuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KZ699_23050 (ligD)
DNA repair and recombination proteins [BR:
acuc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KZ699_23050 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WHO11342
LinkDB
All DBs
Position
2:1969502..1972003
Genome browser
AA seq
833 aa
AA seq
DB search
MGLQTYNAKRSFDKTPEPKGSRAEAQGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGVWRPIGDARKGYRKGH
LEFELDGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHQGGADILEERPESVKTGR
SVEHVAAKPKDTWNSKPVSKKAAASSSGQKQAHALPKGARKQALPSFVPPALATLKPKPP
SGSRWLHEIKFDGYRLQVRLDHGKLQLLTRSGLDWTEKFGDAVARALKALPAETLLMDGE
IVVERDSGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGTDLRGAALTNRKALLEKLLPA
GDPKLRYSEHFEESGELVLDHACRLSLEGVISKVKNSQYVSGRKGEWVKSKCSMRQEFVI
GGYTLSSTSDHAIGSLALGVYEKGKLRHVGRVGTGYTGEVAEMLLGRLKPLDRKESPFGD
KLTALARRDLHFVTPQLVAEVEFRAWSGDGNLRHASFRGLREDKPVEEIEREEKAVSDTG
APQSTIKFTHPDRLYWPDDGVTKEGLADYYAQVWRHMAPFVVDRPLALLRCPEGIEGQRF
FQKHAWRGINKAVEQIKDPKDKGGEPLIRITDFDGLMALVQSATLEIHPWGATTANWEKP
DMITMDIDPGEDVAWEEVIEAALELKRRFEDAGLAAFVKTSGGKGLHVVAPLKPQAGWAA
VKAFSKAMAADMSKAEPDKYLSVATKAKRKGRLFIDYLRNGRGNTAVAPYSTRARPGAAI
SAPLEWSELTAEIGPAHFTVNNIGARLSALKKDPWDGFFAAAKPLPKKPADGS
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgggattgcagacctataacgccaagcgcagtttcgacaagacgcctgagccgaagggt
agccgggccgaagctcaggggtcgagtttcgtgatacagaaacacgatgcccgccggctg
cattatgatttccggctggaaatggacggggtgctgaaaagctgggcggtgacgcgtggc
cccagcctagaccccgaggacaagcgccttgcggtgcatgtggaagaccacccgctgagc
tatggtgatttcgaaggcgtcattcccaagggccaatatgggggtggaacggtcatcgtc
tgggatcgtggtgtctggaggccgattggtgatgcgaggaaaggatatcgcaagggccat
ctcgaatttgaacttgatggcgaaaagctgaaagggcgctggcacctggtgcgtatgcac
ggaaaacccggtgagagcagggaaaactggctgctgatcaagggtgacgatgaggaggcc
cggcatcagggtggtgcggatattctggaggagcggccggaatcggtaaagaccggacgc
agcgtcgagcatgtcgcggccaaaccgaaagacacgtggaattccaagccggtatcgaaa
aaggctgctgcctcttcttccggccaaaagcaggcgcatgccttgccgaagggagcacgc
aaacaggcgcttccgtccttcgtgccgccggcgctggcaacgctgaagccgaaaccgccg
agcggttcccgctggctgcatgagatcaaattcgatggttaccggctgcaggtgcggctc
gatcacggcaaactccagcttctgacccgcagcgggctggactggacggagaagtttggc
gatgcggtggcacgcgcgctaaaggccctgccggccgaaacattgctcatggacggggaa
atcgtcgtggaacgcgacagcggcgcctccgatttttcggcattgcagcaggatctgagc
gaggggcgaagcgaccgtttcgttttttacgccttcgatctgctttatcttgatggcacc
gatctacgcggggcggcattgaccaaccgcaaggctctgctggaaaagctgttgccggcg
ggtgatcccaagctgcgatacagtgaacatttcgaggagagtggcgagctcgtgctggac
catgcctgccgtctcagccttgagggcgttatttccaaggtcaagaacagccaatatgtt
tccggccgcaaaggcgaatgggtcaaatccaaatgctccatgcggcaggaattcgtcatc
ggcggctacacgctctcttcgacatcggaccacgccatcggctcgctggcgcttggcgtt
tatgaaaagggcaagctgcgccatgtcggccgtgtcggcaccggctacacgggtgaggtg
gccgaaatgctgcttggccgcctgaaaccgctggaccgcaaggagagcccgttcggcgat
aagctcaccgcgcttgcacgccgcgaccttcacttcgtcacgccgcaactggtggcggaa
gtcgagtttcgggcctggtctggcgatggcaatctgcgtcacgcttccttccgcggcctg
cgcgaagacaagccggtggaagaaatcgaacgcgaggagaaggccgtgagcgatacaggc
gcgccgcaatccaccatcaaattcacccatccggaccggctttattggcctgatgatgga
gtgaccaaggaggggctcgccgattattacgcgcaggtgtggcggcatatggcgcccttc
gtcgtcgaccgaccgctggcgttgctgcgctgtcccgagggtatagaggggcagcgtttc
ttccagaaacacgcctggcgcggcatcaacaaggccgtggaacagatcaaggatcccaag
gacaagggcggcgaaccgctgatccgcatcaccgatttcgacggccttatggctctggtc
cagtccgccacgcttgaaattcacccatggggcgcaacgactgccaactgggagaagccg
gacatgatcaccatggatatcgaccccggcgaagacgtagcctgggaagaggtgatcgag
gcggcgttggaactgaaacggcgtttcgaagacgccgggcttgcggccttcgtcaagacc
tccggcggtaagggcctgcatgtcgttgcaccgctcaaaccgcaggcgggctgggctgcc
gtcaaggctttctcaaaagcgatggccgccgatatgtcgaaggcggaacccgataaatat
ctttccgtggcaacgaaagcaaaacgcaaaggccgccttttcatcgattatctgcgcaat
ggcaggggcaatacggcggtagcgccctattcgacccgtgcccggccgggggcggcgatt
tccgcgccgctggaatggtcggaactcacggctgagatcggcccggcgcattttaccgtc
aataatatcggcgcgcgcctctcagccctgaaaaaagacccatgggacggttttttcgcg
gcagcgaaaccgctgccgaaaaagcccgctgacggcagctga
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