Alicyclobacillus curvatus: JZ785_06390
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Entry
JZ785_06390 CDS
T08166
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acur
Alicyclobacillus curvatus
Pathway
acur03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JZ785_06390 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acur03400
]
JZ785_06390 (ligD)
Enzymes [BR:
acur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JZ785_06390 (ligD)
DNA repair and recombination proteins [BR:
acur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JZ785_06390 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QSO53478
LinkDB
All DBs
Position
1286674..1287585
Genome browser
AA seq
303 aa
AA seq
DB search
MELVAEHVVKISRPEKVLWPESGFRKIDLIKYYVNVSPYLLRHLKDKPITMIRCPDGIDK
HHFYQKNAPIPTPDWVTIVDVPSDGKTDVLHTVIVDSVATLLWLGNLGCIEIHIGFNPYQ
SPSSPEWLAFDLDPSVPGFERVVQVALSLHELLERLSLPNIAKTSGATGLQVFVPLAPGH
TYAQTRVFSEAVAQYMQTVLPNDVTLERLTKERGQKVYFDYMQHGRGRTLIAPYSPRATR
YGSVSTPVTWTELQQGAKPEDFTLQNVPHRLEQMGDLFGGDMGVGVDLQPTVRFLHRHGG
FQA
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggaacttgttgccgagcacgtcgtgaagatttcacgcccggaaaaggtgttatggccg
gaatccggttttcgcaaaattgacctcatcaagtactatgtgaacgtttcgccgtatctc
ttgcgtcacctgaaggataagcccatcaccatgatccgctgtcctgacggcatcgataaa
catcatttttaccagaaaaacgcccccatacccacacccgactgggtgactatcgtggac
gtcccgtcagacggcaagacggacgtactgcataccgtcatcgtcgactctgtcgcgacc
ctgttgtggctcgggaatctcggctgcatcgaaattcacatcggatttaatccctaccag
tcgccttcgtcgccagagtggcttgcatttgacctggacccatccgttccgggctttgag
agagtggtgcaggtcgccctttcacttcacgagttgcttgagcgcctgtctttgccgaac
attgcaaaaacttcaggtgctaccgggctgcaagtgtttgtcccgctcgcccccgggcac
acgtatgcacagacgcgcgtctttagcgaagcggtcgcacagtatatgcagacggtgctc
ccaaacgacgtgacgctcgaacgtctcacaaaggaacgcggccaaaaggtctattttgat
tacatgcaacacgggcggggacgtacactgattgccccttacagtccgcgtgccactcgt
tacggcagtgtgtctacgcctgtaacgtggacagaactgcagcaaggtgccaaaccggag
gactttacgctgcaaaatgttccgcacagactcgagcaaatgggggatttatttgggggc
gacatgggtgtcggtgtcgacctgcagccgacggttcgatttttgcatcgtcacggtggg
tttcaggcgtaa
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integrated database retrieval system
