Acinetobacter sp. DUT-2: A0J50_09370
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Entry
A0J50_09370 CDS
T04353
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acw
Acinetobacter sp. DUT-2
Pathway
acw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0J50_09370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acw03400
]
A0J50_09370
Enzymes [BR:
acw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0J50_09370
DNA repair and recombination proteins [BR:
acw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0J50_09370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMO40840
LinkDB
All DBs
Position
complement(1999790..2003251)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLFKEIAVQHSSLLVVVARNNQHVAQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGILLISASTLAQRVAPY
SWVLGEHFDIRVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQDAPI
RIDLFDDEIDTLKFFDPETQRTTTTLKSFTVLPAKEFPLKEARSIFRDRYSELFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDKTHMQSQSTLTTYFPKNCIVITNNDIDIDLTSFW
KEVFRRYEDRRHNADQPILPPDELFIAPNNLLSALNQFPRMLVSAEAVEEKAGALNLKVE
QPPKLPVDPKKDKPFAVVKKYIDEANHPVLLVAESAGRRESLRDGLRASLGDIPSVDSFE
QFQKSQFAIAITNAPLDRGLLLTDQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEEAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFGFEVDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHTKNIEDLAEGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTEASIKEAILRELLRGGQVYFLHNEVDTIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDE
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGVPPQSVKHLFSVHQIRLKAEQLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKHPTYYRMEGGQRLKVMVQLEEQEKRIQFI
NDLLAKLLNELHA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttacaacagctcaaagccggtgaaaagcgt
tgggtagggtcgttattaggttcttctgctgcattattattcaaagaaattgccgttcag
cattcatctttgctcgttgtagtagctcgaaataaccaacatgttgctcagttagaaagt
gaacttgaattttatggcataaaaccgacaattttccctgattgggaaattttgccgtat
gaccgcttgtcacctcatcaagatattgtttcagaacgactcgcgattttatccaatatg
ccgcaaaaaggtatattgctcatttcagcaagcactttagctcaaagagttgcaccatat
tcttgggttttaggtgagcattttgatatacgtgtggggcaaaaatttgatttagaacaa
cagaagctacgtttagtacaagctgggtatcatttagtagatacagtttacgaccatggt
gagtttgctgtacgtggcagcattatggatatttttgcatctggtcaggatgcacctatc
cgtattgacctgtttgatgatgaaattgatactttaaaattctttgatccagaaacacaa
agaaccaccacaactttaaaaagttttacagttcttcccgcgaaagagttcccattaaaa
gaagctcgttccattttcagagatcgttattctgaactttttccgactgcaaatcctaag
aaaaacccaatttaccaagatgttcttgatggaattgcatctccgggaattgagttttat
ttaccgttattttttgataaaactcacatgcaatctcaaagtacacttacaacgtacttt
ccaaagaattgcattgtaattacaaataatgatatagatattgatttaaccagtttttgg
aaagaagtttttcgtcgctatgaagatagacgccataacgcagaccagccaattctccct
cctgatgagttatttattgcaccaaataacttactaagtgctttaaatcagttcccgcgt
atgcttgtgagcgctgaagcagttgaagaaaaagctggggctctaaatcttaaggttgag
caaccacctaagttgccagttgatccgaaaaaagacaaaccatttgctgtagttaaaaaa
tatattgatgaagcaaatcatcctgttttattggttgcagaaagtgctggtcgacgtgaa
agtttaagagatggcttgcgtgccagtctgggagatattcctagcgtagatagttttgag
caattccagaaaagtcagtttgcgattgcgattacgaatgcaccattagaccgtggtttg
cttttaaccgatcaattgtctgttatttcagaaaatcagttgtatgagcatcgcgtagtt
caacgtcgtcgtaaacgtcagcaagaagtttcagaagaattcctaattcgtagtttgacc
gaattaagcataggtgctcctgttgttcatattgaccatggtgtagggcgttatgctgga
ttaattactttggcaattgaagggcaagattatgaattcttgcaactagactatgctgaa
gaggcaaaagtttacgtgcctgtgactaacttgcatctcattagtcgctatagtggcgga
gatccagatttagcaccattacataaaattggaactgacgcgtggagtaaggctaaacgt
aaagctttagaacaaattcatgatgttgcagcagagttgctacatatacaggcacgtcgt
cagtcaaaacctggttttggctttgaagtcgatcagtcgctttatatgcaatttgcaagc
ggatttgcgtatgaagaaacacttgatcaagccaatgctattgaagcgacgctttatgat
atgcaacaagctaaaccgatggatcgacttgtttgtggggacgttggttttggtaaaaca
gaagttgcaatgcgagcagcatttgttgcggtgcaaaatggtaagcaggtcgctgtttta
gtaccgacgacattacttgctcaacagcattatgaatcttttaaagaccgctttgccgac
tggcctgttcgtattgaagtattatcacgctttggttcaaataaaacgcatacgaaaaat
attgaagatcttgctgagggcaaagtcgatattgtggtgggtacccataaacttttacaa
gaaaatgtacagtttaaagatctagggttaatggtagtcgacgaagaacatcgttttggt
gtgcgtgataaagagcgtattaaagcattacgcgcagatgttgatatgttaacacttaca
gctacaccaattccacgaactttaaatatggctttttcgggaatgcgtgatttatctatc
attgctacaccgccagcccgtcgtttagctgttaaaacctttgtacaagaacataccgaa
gcgtctattaaagaagcgatcttgcgtgagttactacgtggtggccaagtatatttcttg
cacaatgaagttgatacgattgagagagcagctgaaaatattcgcgtgcttgttcctgaa
gctcgtgtagcagtggctcatgggcaaatgagggaaagagaacttgagcaagtcatgcaa
cagttctatcacaaagaatacaatgtattggtatgttcaacaattatcgaaactggaatt
gatgttccaaatgccaacactattttgatagaaagggctgacaaacttggtttagctcaa
ctacaccaattacgtggccgtgtggggcgttcacatcaccaagcttatgcttatttatta
gttccttcgataaagcatctaaaaggtgatgctgaaaaacgccttgatgcaatccaacgt
gcttcaactcttggtgctggtttcatgctggctacagaagatttagaaattcgaggcgca
ggtgagcttttaggtgagcagcaaagtggttcaatgcaagcaattggttatagtttgtat
atggaaatgcttgaaaaagctactaaggcgattcaacaagggaaaacaccgaattttgat
gcacctttatcattaacagcagaaattaatttacacattcctgcactgattccagatgag
tatttaggtgacgtacatcagcgtttattattctataagcgtattagtaatacagatacc
caagaaaagctcgacaatatacgtatggagctgattgaccgttttggggttccaccgcaa
tcagttaaacacttatttagtgttcaccaaattcgcctgaaagctgaacagttagggatt
actaaaatcgatattaatactcaaggcggcaatattgaattctcgcctgatacacctgtt
caggccatcagtattattcaactcatgcaaaagcatccaacctattatcgtatggaaggt
ggtcaacgtttaaaggttatggttcagcttgaggaacaggaaaaacgaatccaatttatt
aatgatttgttagcgaaattattgaatgaattacatgcttaa
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integrated database retrieval system