Azotobacter chroococcum: Achr_28270
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Entry
Achr_28270 CDS
T03640
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acx
Azotobacter chroococcum
Pathway
acx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Achr_28270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acx03400
]
Achr_28270 (mfd)
Enzymes [BR:
acx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Achr_28270 (mfd)
DNA repair and recombination proteins [BR:
acx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Achr_28270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJE22249
UniProt:
A0A0C4WNT7
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All DBs
Position
3178917..3182363
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPSLPAAAGKQHWGNLPGTALSLAIAEAASAAKRFTLLLTADSLGAERLEQELRF
FAPTLPVLQFPDWETLPYDLFSPHQDIVSQRIASLYRLPELSHGVLVVPITTALYRLAPK
PFLLGSSLVLDVGQRLDVEQMRQRLEAAGYRCVETVYEHGEFAVRGALIDLFPMGSERPY
RIDLLDDEIETLRTFDPETQRSIDKVDSIRLLPAREFPLRKEAVATFRARFRERFDVDFR
RCPIYQDLASGITPAGIEYYLPLFFEETATLLDYLPPATQVFSLPGIEQAAESFWSDVRN
RYEERRLDPERPLLPPAELFLPVEDCFARLKDWPRVVVSSEELEPGVGRERLPARHLPPL
ALDAKASQPLAALADFLAEFPGRVLFAAESAGRREVLLELLARLNLRPQSVDGWPGFLAA
TERLAIALAPLDEGLLLEAPALALVPESQLFGQRVMQRRRREKARDGGDNVIKHLTELRE
GAPVVHIDHGVGRYRGLFTLEVEGQAAEFLMLEYAEEAKLYVPVANLHLIARYTGSDDAL
APLHRLGSEQWQKAKRKAAEQVRDVAAELLDIYARRAARTGFAFRDPAADYATFSASFPF
EETPDQQAAIDAVHADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSSRQVAVLVPTT
LLAQQHYNSFRDRFADWPVRVEVMSRFKSAKDVEGAIAALAEGKIDIVIGTHKLLQDGVK
FKNLGLVIIDEEHRFGVRQKEQFKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATP
PARRLSVRTFVMEQQNTLIREALLRELLRGGQVYYLHNEVKTIDKCARELAELVPEARIA
IGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRKQMTEDAQKRLEAIAGAQDLGAGFVLATHDLEIRGAGELL
GEGQSGQIQAVGFSLYMEMLERAVKAIRKGEQPNLEQPLGGGPDINLRVPALIPEDYLPD
VHARLILYKRIASAADEDELKELQVEMIDRFGLLPEPAKHLVRLTRLKLQADKLGIAKID
AGPQGGRIEFAAHTCVDPLVLIKLIQSQPNRYKFEGATLLKFQIPMERPEERFNTLEALL
ERLTPPSA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgtactgcgtcttccgagcctgccggccgcagccggcaaacaacactggggcaac
ctgccaggcacggcactctccctggcgatcgccgaggccgccagcgctgccaagcgcttc
accctgctcctcaccgccgacagcctgggcgccgaacgcctggaacaggagctgcgcttc
ttcgccccgacacttccggtgctgcagtttccggattgggaaaccctgccctacgacctc
ttctcgccccaccaggacatcgtctcgcagcgcatcgccagtctctaccgcctgcccgaa
ctgagccatggcgtgctggtggtgccgatcaccaccgccctgtaccgtctggcgccgaag
cccttcctgctgggcagcagcctggtgctggacgtcggccagcggctcgacgtggagcag
atgcgccagcgcctggaggcagccggttaccgctgcgtggaaaccgtctacgaacacggc
gaattcgccgtgcgcggcgcgctgatcgatctcttcccgatgggcagcgagcggccctac
cgcatcgacctgctcgacgacgagatcgagaccctgcgcaccttcgacccggaaacccag
cgctcgatcgacaaggtcgactcgatccgcctgttgccggcccgcgaattcccgctgcgc
aaggaggcggtcgccacctttcgcgcccgcttccgcgagcgcttcgacgtcgacttccgc
cgctgcccgatctatcaggacctcgccagcggcatcaccccggccggcatcgagtactac
ctgccgctgttcttcgaggaaaccgccaccctcctcgactacctgccgcccgccacccag
gtgttctccctgcccggcatcgaacaggccgccgagagcttctggagcgacgtgcgcaac
cgctacgaggagcgccgcctcgaccccgagcgtccgctgctgccgcccgccgagctgttc
ctgccggtggaggactgcttcgcccgcctgaaggactggccgcgggtggtcgtctcgagc
gaagagctcgaacccggcgtcggccgcgagcgcctgcccgcgcgccatctgccgccgctg
gccctcgacgccaaggccagccagccgctggcggccctggccgatttcctcgccgagttc
cccggccgcgtgctgttcgccgccgaatcggccggacgccgcgaggtcctgctggagctg
ctcgcgcgcctgaacctgcgcccgcagagcgtcgacggctggccgggctttctcgctgcc
acggagcgcctggccatcgccctcgccccgctggacgagggcctgctgctcgaggcgccg
gccctggcgctggttcccgaaagccagctgttcggccagcgggtgatgcagcgccgccgg
cgggaaaaggcccgcgacggcggcgacaacgtcatcaagcacctcaccgagctgcgcgag
ggcgcgccggtggtgcacatcgaccatggcgtcggacgctaccgcggtctgttcaccctg
gaggtcgaaggccaggccgccgagttcctcatgctggagtacgcggaggaagccaagctc
tacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgccctg
gcgccgctgcaccggctgggctcggagcaatggcagaaggccaagcgcaaggccgccgag
caggtccgcgacgtcgccgccgaactgctcgacatctatgcccggcgcgccgcccgcaca
ggcttcgccttcagggatccggccgccgactacgcgaccttcagcgccagctttcccttc
gaggaaaccccggaccagcaggccgccatcgacgcggtgcacgccgacatgctggcgccc
aaaccgatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggccatg
cgtgccgccttcatcgccgtgcacagcagccgccaggtggccgtactggtgcccaccacc
ctgctcgcccagcagcactacaacagcttccgtgaccgcttcgccgactggccggtgagg
gtcgaggtgatgagccgcttcaagtcggccaaggacgtcgagggcgccatcgccgccctg
gccgagggcaagatcgacatcgtcatcggcacccacaagctcctccaggacggcgtcaag
ttcaagaacctgggcctcgtcatcatcgacgaggaacaccgcttcggcgtgcgccagaag
gagcagttcaaggccctgcgcagcgaagtggacatcctcaccctgaccgccacgccgatc
ccgcgcaccctgaacatggccgtcgccggcatgcgcgacctgtcgatcatcgccaccccg
ccggcgcgccggctgtcggtgcgcaccttcgtcatggagcagcagaacaccctgatccgc
gaggcgctgctgcgcgaattgttgcgcggcggccaggtctactacctgcacaacgaggtg
aagaccatcgacaaatgcgcccgcgagctggccgagctggtgccggaggcacgcatcgcc
atcggccacggacagatgcgcgagcgcgagctggaacaggtgatgagcgacttctaccac
aagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagc
gccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccagctg
cgcggacgagtcggacgcagccaccaccaggcctacgcctacctgctcaccccgccgcgc
aagcagatgaccgaggacgcgcagaagcgcctggaagccatcgccggcgcccaggacctc
ggcgccggcttcgtcctggccacccacgacctggaaatccgcggcgccggcgagctgctc
ggcgagggccagagcgggcagatccaggcggtcggcttcagcctctacatggaaatgctc
gagcgcgcggtcaaggccatccgcaagggcgagcagccgaacctcgagcagccgctgggc
ggcggcccggacatcaacctgcgggtgccggcgctgattcccgaggactacctgccggac
gtgcacgcccgcctgatcctctacaagcgcatcgcctcggcggccgacgaggacgagctc
aaggagctgcaggtggagatgatcgaccgcttcggcctgctgcccgagccggccaagcac
ctggtgcgcctgacccggctgaagctgcaggcggacaagctcggcatcgccaagatcgac
gccgggccccagggcgggcgcatcgagttcgctgcccatacctgcgtcgacccgctggtg
ctgatcaagctgatccagagccagccgaaccgctacaagttcgaaggcgccaccctgctc
aagttccagatccccatggagcgcccggaagaacgcttcaacaccctcgaggcgctgctc
gagcgcctgactccgccatccgcttaa
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integrated database retrieval system
