Anabaena cylindrica: Anacy_4588
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Entry
Anacy_4588 CDS
T02435
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acy
Anabaena cylindrica
Pathway
acy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Anacy_4588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acy03400
]
Anacy_4588
Enzymes [BR:
acy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Anacy_4588
DNA repair and recombination proteins [BR:
acy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Anacy_4588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
PsbQ
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFZ59940
UniProt:
K9ZNN6
LinkDB
All DBs
Position
complement(5193765..5197271)
Genome browser
AA seq
1168 aa
AA seq
DB search
MAFSSIVRALARSPLTAELTLKLNKQQELRLNGISRLPKTLIASALANSEGKDLCVVCAT
LEEAGRVYAQMEAMGWKAVHFYPTSEASPYEPFDPETELSWGQMQVLADLVAKGGVSPEG
KLPQKNTAIIVTVGALQPHLPPPDAFKSFCVTLKKGMEFDLDAFSEKITILGYERVPLVE
TEGQWSRRGDIVDIFPVSSELPVRLEWFGDEIEQIREFDPTTQRSALDKINEITLTPTSF
TPIILDALKDHPHFPENVETLHATSLQGSDLGLLEGSRRFLGLAFAKPASLLDYLAENAL
VAIDEPEQCYAHSDRWVENAQEQWEEVGGRGESYQLPKIHRSLDDCLVEIGKFKKLYLSE
LAEENTGLNLASRPLPVTPHQFAKLAETIRQERDRKFAVWVLSAQPSRSVSLLQEHDCPA
QFIPNPRDYQAIDKLQINHTPIALKYSGLAELEGCILPSFRLVIVTDREFYGQHSLANFG
YIRKRRKAASKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTINHETRDYLVVQYADGLLR
VAADQVGSLSRFRTNGDKAPQLHKMTGKAWENTKNKVRKAIKKLAVDLLKLYAARSQQEG
FSYPADMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKTEVAIR
AIFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYPVNVGLLNRFRSAEEKRNIQKRLA
TGELDIVVGTHQLLGKGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIP
RTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLKPEIVRSAIRQELDRGGQVFYVVPRVE
GIEETTANLREMIPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRV
NTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLG
SGYQLAMRDMEIRGVGNLLGAEQSGQLDAIGFDLYMEMLEEAIREIRGQEIPKVDDTQID
LNLTAFIPSTYITDIDQKMSAYRAVATAKSKEELTLIAAEWTDRYGTIPVSANQLLRVME
LKQIAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENLKESMRSRFIYSPGKVTARGLG
VFKAEQQLQTLIDTLSKMQGAIPEAALV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcttctattgtgcgtgctttggcgcgatcgcctctgacggcagaactgact
ctcaaactcaataaacaacaggagttacggttaaatggtatctctcgtttacccaagact
ttgattgcttcagctttagccaactctgagggtaaggatttatgtgtggtgtgtgccact
ttggaggaagccggacgagtttacgcccaaatggaagcaatgggatggaaagctgtccat
ttttacccgacttccgaagcttctccctacgaaccctttgatcctgaaactgagttaagt
tggggacaaatgcaggttttagctgatttggtagctaagggtggggtttccccagagggg
aagttacctcaaaaaaatacagccataattgtaactgtgggggcgttacagccacattta
ccaccaccggatgcgtttaaatctttttgtgtcactttaaaaaaagggatggaatttgat
ttagatgcttttagtgaaaaaatcacgattttgggatacgaacgagttcctttggtggaa
acggaagggcaatggagtcggcgtggggatattgtcgatatttttccggtgtcctctgag
ttgcctgtgcgcttagaatggtttggagatgaaattgagcagattcgggaatttgacccc
actactcagcgttctgccctggataagattaacgaaataactcttacgccaactagtttt
acaccaattattttagatgcacttaaggatcatcctcatttcccagaaaatgtagagacg
ttgcatgcaacgtctctacagggatcggacttaggactcttagaaggtagtcggcgtttt
ttgggtttagcttttgcaaaacctgcttctctgctggattatttagccgaaaatgcgctg
gtggccattgatgagccagaacaatgttatgctcatagcgatcgctgggtggagaatgca
caggaacagtgggaagaggtaggaggcaggggagaaagttaccaattacctaaaattcat
cggtcgttggatgactgtttagtggaaattgggaaatttaaaaagttatatttatcggaa
ttggctgaagaaaatactgggctaaatttagcgagtagacctttacctgtcacacctcac
caatttgccaagttagctgagacaattagacaagaacgcgatcgcaagtttgctgtttgg
gtactttcggctcaaccttcccgttctgtctctttactccaagaacacgactgtcccgcc
cagtttattcctaatccccgcgactatcaagcgatcgataagctgcaaatcaatcatact
cctatcgctctcaaatattccggtttagcagaattagaaggttgtattttaccttctttc
cgtctcgttatcgtcaccgaccgcgaattttacggacaacattctttagctaattttggc
tatatccgcaaacgtcgcaaagctgcttctaaacaagttgaccccaacaaattgcgtcca
ggggattatgtcgttcatcgtagtcatggtattggtaaatttgtcaagttggaaagtttg
acaattaaccacgaaacccgtgattatttagtggtgcagtatgcagatggtttgctgagg
gttgctgctgaccaagttggttctctgtctcggtttagaactaatggagataaagcccca
caactccacaaaatgaccggaaaagcttgggaaaatacgaaaaataaagtccgcaaagcg
attaaaaaactagcggtagatttgttaaagttatatgcagcgcgatcgcaacaagaaggt
ttttcctatcccgcagatatgccttggcaggaagaaatggaagattcttttccttaccaa
cctaccaccgatcaactaaaagcggtgcaagatgtgaaacgggatatggaaagcgaaaga
ccgatggatcggttagtatgtggtgatgtcggatttgggaaaacagaagttgcaattcgg
gcaatttttaaagctgtcaccgcaggtaagcaagttgcacttttagccccaacaacaatt
ctaactcaacaacattatcacaccatcaaagaacgttttgctccttatcctgtgaatgtg
ggtttacttaatcgttttcgcagcgcggaagaaaaacgcaatattcaaaagcgtttggct
actggagaattagatatagttgtagggacacatcagctattaggtaaaggagtacagttt
cgagatttaggacttttggtaattgacgaagaacaaagatttggtgtaaatcaaaaggaa
aaaatcaaaagtctcaaaactcaagttgatgttttaactctttctgcaactcccattcct
agaaccttatatatgtctttgtctggaattcgggaaatgagtttaattacaacaccaccc
ccaacgagaagaccaattcaaacccatttagcaccattaaaacccgaaattgtcagaagt
gcaattcgtcaagaattagatcggggtggacaggtattttatgtagttccccgtgtggaa
ggcattgaagagacaacagcaaacctgcgggagatgattccagggggaagatttgcgatc
gcacacggtcaaatggacgaaagcgagttagaatcaaccatgctcactttcggcaataat
gacgcggatatcctcgtttgtaccacaattattgaatctggtttagatattccgcgagtc
aacaccattttaatagaagatgctcaccgtttcggtttagctcaattatatcaattgcgc
ggacgtgtcggacgtgccggaatccaagctcacgcatggttattttaccccaaacagcgg
gaattatccgatgccgccagacaaagattaagagcaattcaagaatttacccaacttggt
tctggatatcaattagccatgcgcgatatggaaattcgcggtgtaggtaacttgctaggt
gcagaacaatctggccaattagatgcaattgggtttgacttgtacatggaaatgttagaa
gaagcaattcgagaaattagagggcaagaaatacccaaagttgatgatacccaaattgac
ctcaacctcacagcctttattccttcaacttacatcaccgatattgaccaaaaaatgagc
gcatatcgtgccgtagcaactgcaaaatccaaagaagaattaacattaatagcagccgaa
tggactgatagatatgggactatacctgtttctgcaaatcaacttttgcgagtcatggaa
ttaaaacaaatcgccaaaaatttaggatttagccgcattaaaccagagaataaacagcat
attgttttagaaactcccatggaagaaccagcttggaatttgttagcagagaatttaaaa
gaaagtatgcgttctcgttttatttattctccaggtaaggtgacagctagaggtttaggt
gtatttaaagccgaacaacaattgcagactttgattgatactttaagcaaaatgcaaggt
gcaattcctgaagcagctttagtatga
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