Alicyclobacillus cycloheptanicus: JI721_07430
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Entry
JI721_07430 CDS
T08830
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acyc
Alicyclobacillus cycloheptanicus
Pathway
acyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JI721_07430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acyc03400
]
JI721_07430 (mfd)
Enzymes [BR:
acyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JI721_07430 (mfd)
DNA repair and recombination proteins [BR:
acyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JI721_07430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WDM02588
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All DBs
Position
1616215..1619760
Genome browser
AA seq
1181 aa
AA seq
DB search
MIELAELLAADKEFQTLLSGVTAGGPDGLVTGLGGGARHLYYAATWVAERRRHLDTSLLI
VTHSVTEAETIAEDLKEFLPAEQVFIYPERELSIVDVIAYSREVIADRLRVLQHLAEGKP
AVVVATVASVLQPVMKRDLYRSHLLHLEVGQELPSNYVEWLIQSGYERVEMVETQGQFSV
RGGILDVFPLTTDLPYRLELFDTEIDSIRKFDVGTQRSLEQLREAVIGPALDFLVPPSQM
AEAADELSHHLEQRIRTLTDMEVRDRLQTTVGADIRKLRDGLPFYGQLRYTAQFARHVHT
LMDYFPTPASIILDEPSRIQEREKGLEKEFQEWVASALMRGELLSGTVTDLQFDPLWKHE
NMRGFHYSTFARAAGTHRYSGILNITAKSMQNFHGQMNLLKSEMQRWHRSGTRVFLLAAT
EERANRLERVLEDYRIEAVRTGQVTETLTPQILVGSLSTGFELPMSRIAVIVETEVFGSR
KKGRRLRAEMSDAERIKSYQELRPGDYVVHVNHGIGKYLGIRTLDIDGRHKDYLHLQYAG
NDSLYVPVEQIDQVQRYIGSEEKEPKVYHLGGTEWARVKQRVSRSVKDIAEDLVKLYAAR
QATPGHAYPPDTPWQKDFETMFPYDETPDQLRAIDEIKRDMEQPRPMDRLLCGDVGYGKT
EVAIRAAFKAVMDGKQVAVLVPTTVLAHQHYETFKERFAGFPATVEVLSRFRSRGESQAV
LKGLKDGSIDVVIGTHRLLQKSVQFKDLGLLIVDEEQRFGVTHKERLKQMRTNVDCLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEFNESLVREAIERELGRGGQVYFV
FNQVGAIRGMADRIQRLVPEARIGIAHGQMAEDELERVMLDFLEGDIDVLVTTTIIETGL
DIPNVNTLIVYDADRLGLSQLYQLRGRVGRSNRIAYAYFTYQKDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLAIRGAGNLLGAEQHGFINSVGFDLYNEMLTNAVKEAKGVVEETPP
EPSIDLQIEAYLPDEFIPNPAQKIAVYKKFKFVRSQEAADDLQEELVDRYGDLPDSVANL
LDVTRIKSYAMRYGVEAITQQGYETTIRFPASASVQFNHGALFALTKQYKGQYLKRGNGT
LQVSFRTKDLSDRKLCKLLLTFFADFHKVVQSEEVTQLAKS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttgattgagttggccgagctcttagcggcagataaggagtttcagacactgctttccggt
gtgacggcaggcggtcctgacgggttagtcaccggtctgggcgggggagcgagacatctc
tactacgccgctacatgggtcgccgagcgccgtcgtcacctcgacacctccttgttgatt
gtgacgcactctgtcacagaagccgaaaccattgcggaagatttgaaagaatttctcccg
gcggagcaagtcttcatatatccggaacgagaactgtcgattgtggacgtcattgcctac
agtcgggaggtcatcgcggaccgtttgcgtgtcctgcagcacctggcggaggggaagccg
gcagttgtggtggcgacggtcgcctccgtgttgcagccggtgatgaagcgagacctgtac
cgttctcatctgcttcacctcgaagtcggtcaggagcttccgtccaattatgtcgagtgg
ctgattcaaagcggctacgaacgggtcgagatggtcgagacgcaggggcagttttctgtc
cgcggcgggattctcgacgtgtttccgctgacgacggacctgccgtatcgtctggaactg
ttcgacaccgagatcgactccattcggaagtttgacgtgggaacgcagcgttcgctggaa
cagctccgggaagccgtgattggcccggcgctcgacttcctggtgccaccgtcgcaaatg
gcggaagcggcggatgagttgtcgcatcacctggaacaacgaattcgcacgttgaccgat
atggaggtgcgcgaccggctgcagacgacggtcggcgcggatattcggaagctgcgggac
gggcttccgttttacgggcagctgcgttacacggcgcaatttgcgcgacatgtccatacc
ttgatggattactttccaacgccggcttccatcattctcgatgagccgtcccgcattcag
gagcgggagaaagggctcgagaaggagtttcaagagtgggtggccagcgcgctgatgcgc
ggggaactcttgtccggcacggtgactgacctgcagtttgatcccttgtggaaacacgag
aacatgcgcgggtttcattattccacgtttgcccgcgcggccggcacgcatcgatacagc
ggcattctcaatatcacggccaaatccatgcagaattttcatggacaaatgaatttgcta
aagagtgaaatgcagcgctggcatcgcagcggcacgcgcgtctttctgctggcggccacc
gaagagcgggcgaaccggctggaacgcgtcctcgaggactatcggattgaagcggtccgg
acggggcaagtcaccgagacgttgaccccgcaaatcctcgtcggcagcctctcgaccgga
tttgagctgccgatgtcgcggatcgccgtgatcgtcgagacggaggtgttcgggtcccgc
aaaaagggtcggcggctgcgcgcggaaatgtccgatgcggagcgcatcaaaagctaccag
gaacttcgcccgggcgactacgtcgttcacgtcaaccacggcattgggaagtacctcggg
attcgcaccctggatattgacggccggcacaaggactacctgcacctgcagtacgcggga
aatgactcgctgtatgtgccggtcgagcaaatcgaccaggtgcagcgctatatcggttcg
gaggaaaaggagccgaaggtgtaccacctgggcggcacggaatgggcgcgtgtgaagcag
cgggtgtcgcgcagcgtcaaggacatcgcggaagacctcgtcaagctctatgccgcccgc
caggccaccccagggcacgcgtatccgccggatacgccgtggcaaaaggattttgaaacc
atgtttccgtatgatgagacgcccgaccagctccgcgcgatcgacgaaatcaagcgggat
atggagcagccgcgtccgatggaccggctgttgtgcggggacgtcgggtacggcaaaacg
gaagtcgcgattcgagcggcattcaaggcggtgatggatgggaaacaggtcgcggtcctg
gttccgaccaccgtattggcacaccagcattacgaaacctttaaggaacgcttcgctggg
tttccggccaccgtggaggtgttgagccggttccgtagccgcggggagagtcaggcggtc
ctgaagggactcaaagacggcagtatcgacgtggtgattggcacccaccgcctgctgcaa
aaatcggtgcagttcaaggacctcggcttgttgattgtggacgaggagcagcggtttggc
gtgacccacaaggaacggttaaagcagatgcggaccaatgtggactgcctgacgttgacg
gcaacgcccatcccgcggacactgcatatgtcgatgctgggggtacgggacctctccgtc
atcgagacgccgccggagaaccggtttccggtacaaacgtatgtcgtggaattcaatgaa
agcctcgtccgggaggcgatcgaacgggagctgggacggggcggccaagtctacttcgta
ttcaatcaagtcggcgccatccgaggcatggcggaccgcattcagcgcctggtgccggaa
gcgcgcatcgggatcgcgcatgggcagatggcggaggatgaactggagcgggtgatgctc
gactttctcgaaggcgacattgacgtcctggtgacgacgacgatcattgaaaccgggctg
gacattccgaatgtcaatacccttatcgtgtacgacgcagaccggctgggcctgtcgcag
ctgtaccagcttcgcggccgcgtcggacgttcgaatcgaattgcttatgcatacttcaca
tatcagaaggacaaggtgctgacagaggtcgctgaaaagcggctgcaggccatcaaggaa
tttacggagctcggcagtggatttaaaatcgcgatgcgcgacctggcgatccgcggcgct
ggcaatctgttgggtgcggaacagcacggattcatcaactccgtcggctttgatctctac
aacgagatgctgacgaatgcggtgaaggaggcgaagggcgtcgtcgaggaaacaccgcct
gaaccgtccatcgacctgcagattgaagcgtatctgccggacgagttcattcccaacccg
gcacaaaagattgcggtctacaagaagttcaagtttgtgcgaagccaggaggcagcggac
gacttacaggaggaactggtggaccgctatggggatttgccggacagcgtggccaatttg
ctggacgtcacgcgcatcaagagttatgcgatgcgttacggcgtggaagccattacccag
cagggttacgagacgaccatccggtttccggcatccgcgtctgtgcaattcaatcacggc
gcgttgtttgccttgacgaagcaatataaaggacagtacctcaaacggggaaacgggacg
ctgcaagtctcgttccgcacgaaagacttgtccgaccgcaaactgtgtaaattgcttctg
acgttctttgcggactttcacaaagtggttcaatctgaggaggttacccagcttgccaaa
tcgtaa
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