Anser cygnoides domesticus (swan goose): 106038380
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Entry
106038380 CDS
T04896
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X3
KO
K08135
collagen type XV alpha
Organism
acyg
Anser cygnoides domesticus (swan goose)
Brite
KEGG Orthology (KO) [BR:
acyg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
acyg00535
]
106038380 (COL15A1)
Proteoglycans [BR:
acyg00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
106038380 (COL15A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
3keto-disac_hyd
SPICE
Motif
Other DBs
NCBI-GeneID:
106038380
NCBI-ProteinID:
XP_013040320
LinkDB
All DBs
Position
Unknown
AA seq
1146 aa
AA seq
DB search
MFLDVSERGSKGSLDLTELIGVPLPPSVYFVTGYGGFPAYSFGIDANIGRLTSAIIPLSF
YRDFAIVVTVKPNSDRGGVLFAITDAFQKTIYLGMRLSPVDDSTQRIIMYYTEPGSRISQ
EAASFKVPVMTNRWNRFTVTVQGNYIALFMDCEEYQRVPFQRSAGALVFDSDSGIFVGNA
GATGLEKFTGSIQHLIIRSDPRATEDHCEDDDPYASGDISGNGSIQEYESIPETQEVLSP
SHLPIRLEDTPAEPVEAPPTILSFLEESNFSGHHRPEETSETAKIKEQDSSVMETGQGNS
QSTIVTQKILREEDASGSSVLPTASREKGQKGQNGEDGPTGPPGRPGIGDVQKKDPGSPG
PSAKNGQHDPPGLPGLPGLDGVVGPPGQKGEKGDRGLPGSVGPKGNTGDTGLIGPKGEAG
PHGSPGKQGPPGPPGPPGPPGPPGSTGLSYGSGFEDMEGSGITGLLSESRITGSRVPKGE
RGNIGPPGSKGLPGTKGKPGFPGIAGHPGNMGPKGEKGDPGPQGERGQDGNSIVGPPGPR
GPPGPIIAIPELLLNDTNGIFNFTSIEELLGPPGPDGKPGLPGFPGPQGPKGDIGLPGPK
GPKGQQGEKGEPGVIITADGSSTELLGRKGQKGEAGVVGPVGPRGPIGPAGPKGELGFPG
RPGRPGLNGLRGVKGERGEALNGMPGLPGPPGPPGRPGRIVYIKGTVFPVSRRPHCKMTV
SAPYPGNEEALNVQGAKGNRDCWGLQSTGSSADLKGEKGDRGDPGPPGPPLPPSYFSHFI
NSIKGEKGDNGNTGVKGEKGEPNRGFYLTGPPGPPGRPGLIGPKGDSVVGPRGPPGLPGL
PGLPGYGKTGPPGPPGPPGPPGPPAIYGSAAAMPGPPGPPGEPGSPVSRNLITTFQNIAG
MLEKVHFVAEGTLIYLSETSEVFIRVRNGWRKLQLGELIPIPADSLPPPAISSHGFQSLP
APSPISNMNNGKPVLHLVALNLPFSGDMRADFQCFQQAQLAGLTATYRAFLSSHLQDLAT
VVRKTDRYNLPIVNLKGEMLFHNWESIFKGNGGEFNINVPIYSFDGRNVMTDPSWPQKVI
WHGSTANGIRMVSNYCEAWHTSDLAAMGQASPLKKGKLLDQKAYSCSNQFIVLCIENSFV
SDPQGK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgttcttggatgtatcagaacgaggctcaaaaggaagtcttgatctcacagagttaata
ggagttccactccctccttctgtctactttgtcaccggctacggagggtttccagcatac
agctttggtatagatgccaacattggtcgattgacaagtgctataataccactgtctttc
tacagagattttgctatcgtagttacagtgaaaccaaacagcgatcgtggaggagtgcta
tttgcaataacagatgccttccagaaaacaatttacttgggaatgagactttcaccagtt
gatgacagcactcagagaataattatgtactacacagagcctggttcccgtatctctcaa
gaggctgcttcatttaaagtgccagtgatgactaacaggtggaataggtttacagtgact
gttcagggaaattatattgctttgttcatggactgtgaagaatatcagagagttccgttt
cagaggtcagctggagccttggtatttgattctgactctgggatattcgttggtaatgca
ggagccacgggactggaaaagttcacaggttcaattcaacatctgattatcagatctgat
ccaagagctactgaagaccattgtgaagatgatgatccttatgcttcaggggacatcagt
ggcaatggtagtatccaagagtatgaaagcattcctgagacacaagaagtcctttcacct
tctcatcttcccataaggcttgaagatacaccggccgagccagtggaagcacccccaacc
atattgtcttttttggaagaaagcaatttctcgggacaccacagaccagaagaaacctct
gaaacagctaaaattaaagaacaagattcttctgtcatggaaactggacaaggcaacagt
cagtctaccattgtcacacagaaaatcttaagagaagaagatgcctctggttctagtgtt
ttgccaacagcgagcagagagaagggacagaaaggtcagaatggagaggatgggcccaca
ggacctccaggaaggccaggaataggagatgtgcagaaaaaagacccaggatctcctgga
ccttcagcaaaaaatggccaacatgatccacctggtcttccaggtcttcctgggcttgat
ggagtggttggcccaccaggacagaagggagaaaagggtgatagaggtcttcctggctcc
gtgggtccaaagggtaatactggagacactggattaataggccccaaaggagaagctggt
cctcacggctctcctgggaaacaaggacctccaggacccccagggcctcctggaccacct
ggacctcctggatccacaggtctaagctacggttcgggatttgaggacatggagggatca
gggattactggcttgctaagtgaatccagaattacaggatcaagagtgccaaagggagaa
agaggaaacattggtccaccaggttcaaagggactgccaggtacaaaaggaaaaccaggc
tttcctggcattgctggacatcctggaaatatgggtccaaaaggggagaagggtgaccca
ggacctcagggtgaacgaggacaggatgggaacagtattgtgggtccacctggaccacga
ggaccaccaggaccaatcatagcaatacctgagctactactcaatgatacaaatggaatt
tttaattttacttcaattgaagaactgctcgggcctcctggtccagatggcaagccaggt
ctaccaggatttcctggccctcagggaccaaaaggtgatattggtttgcctggaccaaaa
ggacccaaaggccaacagggtgaaaagggagaaccaggagttatcattactgctgatgga
tcttcaactgaattattaggaagaaaagggcagaagggtgaagctggagtggtgggaccg
gtgggaccaaggggaccaataggacctgctggacctaaaggagaacttggcttcccagga
cgaccaggccgcccaggactcaatggactaagaggtgtgaaaggtgaacgaggcgaagca
ttaaatggcatgcctggcttgcctggacccccagggccccctggacgtccaggacgtata
gtctacatcaaaggaacagttttcccagtatctcgcagacctcattgcaagatgacagtg
agtgctccttaccctgggaatgaagaagctcttaatgtccaaggtgctaaaggaaacaga
gattgttgggggctgcagtccactgggagttcagcagacttaaaaggagaaaagggagac
agaggtgatccaggaccaccaggtccacctctacctccatcatatttcagccactttatt
aatagcataaagggtgaaaaaggagacaatggaaacactggtgtaaagggagaaaaagga
gaaccaaacagaggtttttacctgacaggacctcccggaccacctggaagaccaggatta
attggaccaaaaggggactcagttgttggacccagaggacctccagggttacctggctta
cctggattaccaggttatggaaaaactggacctcctggcccacctggcccaccaggacca
ccaggaccccctgcaatatatggctcagcagctgcaatgcctgggccaccaggtcctcct
ggagagccagggtcacctgtaagcaggaatctgattacaacattccaaaacattgcgggt
atgttggaaaaggttcatttcgtagcagaaggtacgctaatctatctgagtgaaaccagt
gaggtttttatccgtgttcggaatggatggagaaaattgcagcttggtgagctaattccc
atccctgctgacagccttcctcctccagccatatcaagccatggatttcagtctcttccg
gcaccgagtccaatatcaaatatgaacaatggaaagccagtactgcatctggtggcttta
aacttgccattttctggtgacatgagagcagattttcagtgttttcaacaggcccagcta
gcaggtttgacagctacttatagagcttttctctcatcacatttgcaagatctggccaca
gttgtcagaaaaacagaccgatacaatttaccaatagtcaatcttaagggagaaatgctt
ttccacaactgggaatctatatttaaaggcaatggtggagaattcaacattaatgttcca
atatactcctttgatgggagaaatgtcatgacagacccatcctggcctcaaaaagtaata
tggcatggttcaactgcaaatgggatccgaatggttagcaactactgtgaagcctggcac
acaagtgatttggcagctatgggacaagcatcaccactgaagaagggaaaacttctcgat
cagaaagcatatagctgtagcaatcagtttattgttctctgtattgaaaacagttttgta
tctgatccccaaggaaaataa
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