Aeromicrobium duanguangcaii: NP095_00815
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Entry
NP095_00815 CDS
T09547
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
adb
Aeromicrobium duanguangcaii
Pathway
adb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
adb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NP095_00815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adb03400
]
NP095_00815
Enzymes [BR:
adb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NP095_00815
DNA repair and recombination proteins [BR:
adb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NP095_00815
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UUI68683
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Position
160138..162540
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AA seq
800 aa
AA seq
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MAGSAPQTVTVDGRLLRLTNSDKLIYPATGTTKAEVIAYYVEVAPWLLPHLAGRPVTRKR
WVDGTGHDAQVFFEKNLPDSAPSWIRRVTIKHKSHTNTYPIFESVADLAWAGQVAALELH
VPQWRVDATGVAQNPDRLVIDLDPGPGVGLPECVEVAHAARELLADVGLECVPVTSGSKG
IHLYAPLDGQHDSDYVNAFAKQVAQALEGVMPELVVSDMSKAKRQGKVLVDWSQNNGAKT
TISPYSLRGRDEPTVAVPREWDELDENLRHLTIDEVPARLAERGDPMAALAAPVTDRLAT
YRSMRDAAKTPEPVPDSVVVGRTGDPIFVIQEHHASRLHWDFRLEREGVLVSWALPKGVP
ESSSGNHLAVQTEDHPLEYATFAGDIPKGEYGAGHVTIWDHGHYDLEKWNDHEVIATLHG
SRDGGLGGSKRLALIKTGENWLIHLMKEQNEPTPKKAKTASKQGRAPKKSEETARAGFVS
PMLAVLAGTRDAAGDDWAYELKWDGIRCVAVVNGEKVRLFSRNHNDVSASYPELVEELSQ
LGLDAVLDGEIVALDASGVPSFGRLQQRMGVTKAADVERLRRTVPPRLLVFDLVEHDGTS
LRDRSYDDRREALENLDLDGDLVQVPPAHGGSLDEAVALSRRHKLEGVVAKRRKAPYETG
ARSTDWLKIKNQDAQEVVIGGWRPSKGGRGIGSLLLGVPVEGGLQYLGRVGTGFTEAERL
RLRQLLDPLTRKTSPFVDEVESAAARDATWVTPKVVGEVVYGDWSPAGHLRHASWRGLRP
DKDAAEVVLEGSSEVRTTPS
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcggggtcggctcctcagacggtcacggtcgacgggcgtctgctgcggctcacgaac
agcgacaagctcatctatcccgcgaccgggacgacgaaggccgaggtgatcgcctactac
gtcgaggtcgccccgtggctgctgccgcacctggccggccgtccggtcacccgcaagcgc
tgggtcgacgggaccggccacgacgcccaggtcttcttcgagaagaacctgcccgactcg
gcgccgtcctggatccgccgggtcacgatcaagcacaagtcgcacacgaacacctatccg
atcttcgaatcggtcgccgatctcgcgtgggcgggccaggtggccgcgctcgagctgcac
gtgccgcagtggcgggtcgacgccaccggggtggcccagaacccggaccgcctcgtgatc
gatctcgaccccggaccgggggtcggcctgcccgagtgtgtcgaggtcgcccacgcagcc
cgtgagctgctcgccgacgtcggtctcgagtgcgtgcccgtcaccagcggcagcaagggc
atccatctgtacgcgccgttggacggccagcacgactccgactacgtcaacgccttcgcc
aagcaggtcgcgcaggcgctcgagggggtcatgcccgagctcgtcgtcagcgacatgtcc
aaggccaagcgccagggcaaggtgctggtcgactggagccagaacaacggcgccaagacg
accatctcgccgtactcgctgcgcggacgggacgagcccaccgtcgccgtgccccgcgag
tgggacgagctcgatgagaacctgcgccacctgacgatcgacgaggtgcccgcgcggctg
gccgagcgcggcgacccgatggccgcgctggcggcgccggtgaccgatcggctggcgacc
taccgctcgatgcgtgacgccgcgaagacgcccgagccggtgccggactccgtcgtcgtc
gggcgcacgggtgacccgatcttcgtcatccaggagcaccacgccagccgcctgcactgg
gacttccggctggagcgcgagggcgtcctggtgtcgtgggcgctgcccaagggcgtgccc
gagtcgtcctcgggcaaccacctggcggtgcagaccgaggaccatccactggagtacgcc
acgttcgccggggacatcccgaagggcgagtacggcgccgggcacgtcacgatctgggac
cacggtcactacgacctggagaagtggaacgaccacgaggtcatcgcgacgctgcacggc
agccgcgacggcgggctcggcggatcgaagcggctcgcgctgatcaagaccggtgagaac
tggctgatccacctcatgaaggagcagaacgagcccacgccgaagaaggcgaagacggcc
tcgaagcaggggagggcgccgaagaagtccgaggagaccgcgcgcgcggggttcgtgtcg
ccgatgctggcggtgctggcgggcacccgtgacgccgcgggcgacgactgggcctacgag
ctgaagtgggacggcatccggtgcgtcgccgtcgtcaacggcgagaaggtgcggctgttc
tcgcgcaaccacaacgacgtcagcgccagctatcccgagctcgtggaggagctctcgcag
ctggggctcgacgccgtgctcgacggcgagatcgtggcgctcgacgcgtcgggcgtgccg
agcttcggacggctgcaacagcgcatgggcgtcaccaaggccgccgatgtcgagcggctg
cggcgcaccgtgcccccgcggctgctcgtgttcgacctcgtcgagcacgacgggacgtcc
ctgcgcgaccggtcctacgacgaccgccgcgaggccctggagaatctcgacctcgacggc
gacctggtccaggtcccgcccgcgcacggcggctcactcgacgaggcggtcgcgctcagc
cgccgccacaagctggagggtgtcgtcgccaagcggcgcaaggctccctacgagaccggg
gcccggtcgacggactggctgaagatcaagaaccaggacgcccaggaggtcgtcatcggc
ggctggcgtcccagcaagggcggccgcggcatcggctccctgctgctcggcgtccccgtc
gagggcggactgcagtacctgggccgggtggggaccggcttcaccgaggccgagcggttg
cggctgcgccagctgctggacccgctgacccgcaagacctcgccgttcgtcgacgaggtc
gagtcggccgccgcgcgcgacgcgacctgggtgaccccgaaggtcgtgggcgaggtcgtc
tacggcgactggtcgcccgccgggcacctgcgccacgccagctggcgggggctgcggccc
gacaaggacgccgccgaggtcgtgctcgaaggttcttccgaggtgcgtacgactccgtcg
tga
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