Adhaeribacter radiodurans: HUW48_22335
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Entry
HUW48_22335 CDS
T06731
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
add
Adhaeribacter radiodurans
Pathway
add03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
add00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUW48_22335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
add03400
]
HUW48_22335 (mfd)
Enzymes [BR:
add01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUW48_22335 (mfd)
DNA repair and recombination proteins [BR:
add03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUW48_22335 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QMU30591
UniProt:
A0A7L7LCP7
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All DBs
Position
5606021..5609392
Genome browser
AA seq
1123 aa
AA seq
DB search
MKIKDFLELYRLDPVVQTIAERLKSPEKAHLHLKGLAGSLDAVMAVAVSSLQPGHHVCVL
HDKEEAAYFLSDLQHLFNGKQEALLFPSSYKRPYSFDETENANILMRAEVLNQISNKAAA
GLLIVAYPEALTEKVINKKSLVANTFSAKVGEKLDVNFLSEVLTEYDFERTDFVYEAGQF
AVRGGIVDVFSYANELPYRVELFGDEIESIRTFNPNTQLSVETQNSVSIVPNVQTKLLQE
TRESFLEFLPSNTRLWFKDVRHAIDIIDESFTKAEQAFEYLMLTSGNTKVVSKPEDLFES
GKSFKKLLEPFTTVEFGKRFHFKASETITFNTKPQPSFNKDFNLLVSNLHDNQTNGFTNI
IAADSPRQIDRLTTIFDELDHAVKFQALTISLREGFIDDQVKVALYTDHQLFERFYKYKS
KERFSKSKALTLKELRSLQPGDYVVHVDNGIGRFAGLEKVEVGGKMQEAIRLVYRDDDLL
YVSIHALHKISKYTGQEGTPPSMSKLGSPEWENKKKRVKSKVKDIATELIKLYAKRKSAP
GFAFSRDGFMQAELESSFIYEDTPDQAKATEDVKNDMEQPHPMDRLVCGDVGFGKTEVAI
RAAFKAATDSKQVAVLVPTTILAMQHYKTFRDRLEKFPVNVEFVNRFKTAKDIKETLQRV
AEGKTDILIGTHRIVSKDVKFKNLGLMVIDEEQKFGVKTKEKLKEMRVNVDSLTLSATPI
PRTLHFSLMGARDLSVIATPPPNRQPVQTELHVFDQTIIRDAVMYELKRGGQVFFVHNRV
ADLDEMANLILKLVPDARITFAHGQMDGEQLEKRMMKFVEGEFDVLVSTNIIESGLDIPN
ANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTPPVSSLPSDARKRLSTLEEFSDL
GDGFKVAMRDLDIRGAGNLLGGEQSGFINDLGFEMYHQILDDTIKELKETEFRDLFLGSE
KDLNQFLDVVRECTVETDLEILIPDTYVSNISERLNLYSKLDRVKDLPALEKIQKGIIDR
FGPLPESVEKLIQIVKLRWKAQEVGFEKLTIKKEVMKGYISSVNNDKYFQSETFGHILKY
VQQHPRQSRLKETKDKLIVIFDNIKSVNAACDVFEQLTESIKH
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaataaaggatttcctggaactataccggctcgatccggtagttcaaaccattgca
gaacgccttaaatcgccggaaaaagcccatttgcacctgaaaggcttagcaggcagttta
gatgccgtaatggccgttgcagtaagcagtttacagcccggccaccatgtttgtgtatta
cacgataaagaagaagcagcttactttttatcggatttgcagcatttatttaacggcaag
caagaagccttgctgtttccatcgtcgtacaagcgaccttattcgttcgatgaaacggaa
aatgccaatattctgatgcgggccgaagtactaaatcagattagtaataaagccgctgct
ggcttgttaatagtagcctatcccgaagcccttactgaaaaagtaatcaataaaaaatca
ttggtagcgaatacatttagcgcgaaagtgggcgaaaaactggatgtaaactttttatcg
gaagttttaactgagtacgattttgagcgcaccgattttgtttacgaagccggccagttt
gccgttcgggggggcattgtggatgtattttcgtatgccaacgaattgccgtaccgggtt
gagttgttcggtgatgagattgaaagcatccggacgtttaatcccaacacgcagctttcc
gtggaaactcaaaacagcgtttccattgtacccaacgtgcaaaccaaattattgcaggaa
acccgggaatcttttttagaatttttaccctccaatacccggctctggtttaaagacgta
cgccacgccattgatataattgatgaatcgtttacgaaagcggaacaggcttttgagtat
ttaatgctcaccagtggtaacaccaaagtagtttctaagcccgaagacttatttgaatcg
ggcaaaagctttaaaaagttactggagccgtttactacggtagaatttggcaaacgcttt
cactttaaagcttccgaaaccataacttttaataccaagccacaaccatcatttaataag
gattttaatttactggttagcaacctgcacgataaccaaaccaatggctttactaacatt
attgcggccgattcgccgcggcagattgaccggcttaccactatttttgatgagctcgat
cacgcggtaaaatttcaggcgcttaccatttcactgcgcgaaggctttatcgatgaccag
gtaaaagttgccctgtacaccgatcatcagttgtttgaacgcttttataaatacaaaagc
aaagaacggttttctaaatccaaggcccttaccttaaaagaactacgctcgctgcaaccc
ggcgattatgtggtacacgtagataatggtattggccgctttgccggcctcgaaaaagta
gaagtaggcggtaaaatgcaggaagccattcggttggtataccgcgacgatgatttgttg
tacgtgagtattcacgcgctgcataaaattagtaaatataccggccaggaaggcactccg
cctagcatgagcaagctgggttcgccggaatgggaaaacaaaaagaagcgggttaagagc
aaggtaaaagatattgccaccgaactgattaaactgtacgccaaacgcaagtcggcaccg
ggatttgctttttcccgcgatggatttatgcaagccgagttggaatcctcgtttatttac
gaagacacccccgaccaggccaaagcaaccgaagacgtcaaaaacgatatggagcagccg
caccccatggaccgcctcgtgtgcggcgatgtgggttttggcaaaaccgaagtagctatt
cgggccgcttttaaagccgctaccgacagcaaacaagttgcagtactggtgcctactacc
attttagccatgcagcattacaaaacttttcgcgatcgtttagaaaaatttccggtaaac
gtagagtttgtaaatcgttttaaaacggccaaggacataaaagaaactttacagcgcgtt
gccgaaggaaaaaccgatattctgattggcacccaccgcattgtgagtaaagatgtaaag
tttaaaaacttgggcttaatggtgattgacgaagagcaaaaatttggcgtaaaaacgaaa
gaaaagctaaaggaaatgcgcgtgaacgtagattcgcttacgctctcggctactcctata
ccgcgtacgctgcatttttcattaatgggtgcccgcgatttatcggtaattgctacgcca
ccgcctaaccgccagccagtacaaacggagctgcacgttttcgatcagactattatccgc
gatgccgtaatgtacgagttaaagcgcggaggtcaggttttctttgtgcacaaccgggtg
gccgacctggatgaaatggctaacctgattttgaaattagtacccgatgcccgcattact
tttgcccacggccaaatggacggcgaacagctcgaaaagcgcatgatgaaatttgtggaa
ggcgaatttgacgttttagtttccacaaacattattgaatctggcttggatattccgaat
gcgaacaccattattattaaccgggcgcacatgtttggtttaagcgatttgcaccagatg
cgcgggcgcgtagggcgctcgaacaaaaaagcgtattgttatttacttaccccaccggtg
tccagtttaccttctgatgcccgcaagcgtttgagcactttagaagaattttcggatttg
ggtgatggttttaaagtagccatgcgcgatttggatattcggggagcaggtaacttgttg
ggtggtgaacaaagtggttttatcaacgatttaggttttgaaatgtaccaccagattctg
gacgataccattaaagaactaaaagaaaccgaattccgcgatttattcctgggctctgaa
aaagacctgaaccaattcctagacgtggtgcgtgaatgtaccgtagaaaccgacctggaa
atacttataccggatacctacgtgagcaacatttcggagcgtttaaacctgtacagcaaa
ctcgaccgggtaaaagatttgccagccctggaaaaaattcaaaaaggtatcatcgatcgg
ttcggccctttaccggaatcagtagagaagttgattcagattgtgaaactacgttggaaa
gcgcaggaagtaggttttgagaagctcacgattaagaaagaggtaatgaaagggtatatc
tcttcggtaaataacgacaaatattttcagtcagaaacttttggccacatcttaaaatac
gtgcagcaacatccccgtcaatcgcggctgaaagaaaccaaagacaaactgatcgttatt
tttgacaacattaaatcggtaaatgccgcctgcgacgtatttgagcagttaaccgaaagt
attaagcactaa
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