Acropora digitifera (stony coral): 107348354
Help
Entry
107348354 CDS
T04352
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
107348354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adf03400
]
107348354
Enzymes [BR:
adf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107348354
DNA repair and recombination proteins [BR:
adf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
107348354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_A_C
DNA_ligase_A_N
BRCT_2
BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
107348354
NCBI-ProteinID:
XP_015769865
LinkDB
All DBs
Position
Un
AA seq
472 aa
AA seq
DB search
MIIIKWLIRIIFKELKVGLSENSVFSAFHPDAVELHSVCNSLSKVCIDLHDPKIRMNEAQ
MSLFSPFRPMLAERVAIDEVEKLMNNEPFYIETKVDGERMQLHKEKNAFMYFSRSANDYT
HVFGSQPSSGFLTPLIADCFTSSLHSCILDGEMIVVDPTADVWLSKGMNVDVKSLSTYEN
ASYHPCFIVFDILVINDKKLANVPLRERIKTMEKLLKPKPGYLQFVERQDAATRGDVVKA
LNEAIDKREEGLVIKSPSSVYKPNLRSGSGWLKIKPEYVDSLSDEMDLLIVGGYFGVGRR
SGMISHFMCAVAVSSSIPGQHPSLFHSFCKVGTGYTMNELHELDQLLHPHWRPFDTKRPP
ETVILAPGYKLLVICCRVYLDQYACIGDISTGILNSSLELVGLKLRLYGAQITDTLDDGV
THIVLDESDLRRYEELQRAYVALPKRHFVTQDWVAQSVQASKLLTERNFRPV
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgataataattaagtggttaatcaggattatcttcaaggaactgaaggttggcctcagt
gagaactctgtattcagtgctttccatcctgatgcagttgagctccacagtgtttgtaac
agtttgtccaaggtatgcattgatcttcatgatcccaaaatcaggatgaatgaagctcag
atgtctttattctcgccgttcagaccaatgttggctgagcgagtagctattgacgaggtt
gaaaagttgatgaacaatgaaccgttttacatagaaacaaaagtcgatggggaaagaatg
caacttcataaagagaaaaatgcgttcatgtacttttcaagaagtgctaatgactacaca
cacgtatttgggtctcagccatcctctgggtttctcacacctcttattgccgactgtttc
acaagctcattgcattcctgtatattggatggtgaaatgattgtggttgatccaacagca
gatgtttggctatcaaaagggatgaacgtggatgtaaaatcattgtctacttatgaaaat
gctagctaccatccttgtttcattgtgtttgatatccttgtcatcaatgacaaaaaactt
gccaatgtccctctgcgtgaaagaatcaaaacaatggaaaaactactgaaaccaaagcct
gggtatttacagtttgtggaaaggcaggatgctgcaacgagaggagatgttgttaaagct
cttaatgaggcgattgataaaagagaagagggattggtcattaagtcgccctcttctgtt
tacaaaccaaatctgagaagtggaagtggctggctgaaaattaagcctgagtatgtggat
agtttgagcgatgagatggatctccttattgttgggggctattttggagttggtcgtcgc
agtggaatgatctctcattttatgtgtgccgtggctgtgtcgtcaagtatcccaggccag
catccttcattgtttcactcattttgcaaggttggaaccggttacacaatgaatgagtta
catgagctggaccagttactgcatccacattggcgaccatttgacactaaaagaccacct
gaaacagttattttagcccctggatacaaattacttgtcatctgttgtagggtatacctt
gatcaatacgcttgtattggagacatttcaacagggatactaaacagcagtttagagctt
gtcgggttaaagcttcgtttgtacggcgcacaaatcacagatactttggatgatggagtg
acacacatcgttcttgatgaaagtgacctccgacgttatgaggaacttcaaagagcatat
gtggctttaccaaagcggcattttgtcacacaagactgggtagcgcaaagtgtacaagca
agcaagctcttaacagaaaggaattttagacctgtttag
DBGET
integrated database retrieval system
