Alloalcanivorax dieselolei: B5T_01479
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Entry
B5T_01479 CDS
T02259
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
adi
Alloalcanivorax dieselolei
Pathway
adi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5T_01479 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adi03019
]
B5T_01479 (deaD)
03009 Ribosome biogenesis [BR:
adi03009
]
B5T_01479 (deaD)
Enzymes [BR:
adi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B5T_01479 (deaD)
Messenger RNA biogenesis [BR:
adi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B5T_01479 (deaD)
Ribosome biogenesis [BR:
adi03009
]
Prokaryotic type
rRNA helicases
B5T_01479 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AFT69761
UniProt:
K0CDZ0
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All DBs
Position
complement(1582677..1584356)
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AA seq
559 aa
AA seq
DB search
MLHSDSGFAALGLPAPLLDAIGKLGFETPSPIQERSIPVLLDGDDLLGQAQTGTGKTAAF
GLPLLARIDPEQRCPQLLVIAPTRELALQVADAMETFARQLRGVKVVAVYGGSEYRTQLR
ALRDGAQVVVGTPGRIMDHMQRGSLNLDRLQALVLDEADEMLRMGFIDDVEWILEHTPDE
RQLALFSATMPNVIRRVAERHLKSPKWIRIENDTTTKSGIRQRFWSVSGLNKLDAMCRIL
EGETHDGVIVFARTKQSTLELAEQLQRRGLRAEALNGDIPQAQREKTVARLREGRFDLLI
ATDVVARGLDVPRISHVINYDMPADTEAYVHRIGRTGRAGRNGEAILFVSHRERGMLRAI
ERATGQSLESMDLPSVDALNSKRLAKLQEQLVAGLESKHREEAETVLSALREQLDLDDEK
LALGLAALLVAKEPVILKPAPVGKPPRAHSQHKDGPRKEGPRKEGRPANNRRRTAGSDGD
ANGDMQVYRVEVGHAHGVRPGNLVGAIANEAGLPSRQIGAIRIHQEHSTVALPHDLTAKQ
LNILKRTRVCQRPLSLEAL
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgttgcatagcgattccgggttcgccgctttgggcttgcccgcgccccttcttgatgcc
atcggcaaactgggttttgaaaccccgtcgccgatccaggagcgaagcatccccgtcctg
ctggacggcgatgatctgctcggccaagcacaaaccggtaccggcaagaccgccgctttc
ggcctgccgttgctcgcccgtatcgatccggagcagcgttgcccacagctgctggtgatc
gcccccactcgcgaactggccctgcaagtggccgacgccatggaaaccttcgcccgccag
ttgcgcggcgttaaggtcgtggcggtatacggcggtagcgaataccgcacccaattgcgc
gcgttgcgagacggcgcccaggtggtggtgggcacccctggccggatcatggaccacatg
cagcgcggcagtctgaacctggaccgcttgcaggcgctggtgctggacgaagccgacgaa
atgctgcgcatgggttttatcgacgacgtcgaatggatcctggaacacaccccggacgaa
cggcaattggcactgttttccgccaccatgccgaacgtgatccggcgcgtggccgagcgt
catctgaagtcgccgaagtggattcgcattgaaaacgacaccaccaccaagagcggcatc
cgccagcgcttctggtcggtctccggcctcaacaagctggacgccatgtgccgtatcctg
gagggcgagacccacgacggcgtcatcgtcttcgcccgcaccaagcagtccaccctggaa
ctggccgagcaattgcaacgccgtggcctgcgcgcggaagccctgaatggcgacatcccc
caggcgcagcgggaaaaaaccgtggcccgcctgcgtgaaggccgcttcgatctgctgatc
gccaccgacgtggtggcccgtggcctggacgtgccgcgtatcagccatgtgatcaactac
gacatgcccgccgacaccgaagcctatgtgcaccggatcggccgcaccggccgggccgga
cgtaatggcgaagcgatcctgttcgtgtcgcaccgcgagcggggcatgctgcgcgccatc
gagcgcgccaccggccaaagcctggaatccatggacctgcccagcgtcgacgcgctcaac
agcaagcgtctggccaagttgcaggagcagctggtggcgggtctggaaagcaaacaccgc
gaagaggcggagacggtgctgagcgccctgcgcgaacagctcgatctggacgacgaaaag
ctggccctgggcctggcggcgctgctggtggccaaggaaccggtgattctgaagccggcc
ccggtgggcaaaccgccgcgtgcccattcacagcacaaggacggcccgcgcaaggaaggt
ccgcgcaaggaaggccgtccggccaacaatcgccgccgtaccgccggcagcgacggcgac
gccaacggtgacatgcaggtttaccgggtggaagtgggccacgcccacggtgtacggccg
ggtaatctggtcggtgccatcgccaacgaggcgggtctgcccagccgccagatcggcgcc
atccggattcaccaggaacacagcaccgtggcgctgccgcacgacctcaccgcgaagcag
ctcaacatcctcaagcgcacccgcgtttgtcagcggccgctctctctggaagccctctga
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