Alloacidobacterium dinghuense: H7849_10660
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Entry
H7849_10660 CDS
T08177
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
adin
Alloacidobacterium dinghuense
Pathway
adin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
adin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H7849_10660 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adin03400
]
H7849_10660 (ligD)
Enzymes [BR:
adin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H7849_10660 (ligD)
DNA repair and recombination proteins [BR:
adin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H7849_10660 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
AA_synth
mRNA_cap_enzyme
PSK_trans_fac
Peptidase_M29
Motif
Other DBs
NCBI-ProteinID:
QNI34306
UniProt:
A0A7G8BP36
LinkDB
All DBs
Position
complement(2620251..2622953)
Genome browser
AA seq
900 aa
AA seq
DB search
MARKKAKQVSPSDAVDEQLARYRAMRDFSMTAEPSGSRQKGSESELPFVIQKHAATRLHY
DFRLGWQGVLKSWAVAKGPSYYPGDKRLAVQVEDHPMEYGGFEGTIPKGQYGGGTVMVWD
QGTWEPQGDADEGFRTGRLKFVLHGQKLKGKWTLVRMGGRAAREAKPNWLLIKEHDEYER
GPEEQAITESKPDSVVTGRDIEAIGTQEDHVWQSKESKKRNLSRLAQKRLRFRERTTQVD
APDRSNVLNGIPEEKMPEFIPPHLAAQVSVPPDGEDWIHELKLDGYRIQLHVVEEEPGKR
NVFIYTRGGLDWTHRMPDIAKAAAELPVKSALIDGEVVVLDPSGKTSFADLQAAFQEEKD
AHLTYVAFDLLHLDGHNVRDLALDQRKAILEGLLGELGDDSILRFSAHIRARGEETFRNA
CKLGAEGIISKLASSKYSSGRSKTWLKAKCVHQQEFVIGGFTPPGDGADGVGSLLLGYYQ
DGKLMYAGRTGTGFTHASQKALRKQLDELQQSKASFAELTADARKDAVWVKPDLVAEVQF
ATWTGDHRVRQASFQGLREDKPAMEIRREEPIAMPKPSRTRKESSHNAPVEKTSSKATSV
IGDMRLTHPEKILDDESNVTKKQLAEYYFEIADHLLPFIAGRPLSIVRCPEGCGKPCFFQ
KHVGQGVARGIDSVLVPNKKGEGSEEYITVSTQEGLVGLAQMGVLEIHPWGSRNDSLETP
DQLIFDLDPDPAVEWKTLVEGAHEVRDVLKELKLVSFVKSTGGKGLHVVVPIEPKHEWAD
VKEFTRNVARILEANHPDRYLIKMTKSARKGRIFLDYLRNDRGSTAIASYSPRARKGVRV
AIPLQWEELHKGNPIEYGVANFNTWKKRLKNDPWEDFWLTKQALSERAVTAAANLAESAG
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcaagaaagcaaagcaggtttctccttctgacgcagttgatgagcaactggca
cgttaccgtgccatgcgtgacttctcgatgactgccgaaccaagtggcagtaggcaaaag
ggaagcgaaagtgagttgccttttgtgattcagaagcatgctgcaacaaggctccactat
gactttcgccttggctggcaaggcgtgttgaagagttgggctgtggccaagggtccaagc
tattatcccggcgacaagaggcttgcagtgcaggtggaagaccatcccatggaatatgga
gggtttgagggcacaattcccaaagggcagtacggcggcggcacggtgatggtgtgggat
caaggaacctgggaaccccagggcgatgcggatgaaggcttccgtactggtcgattgaag
tttgtcttgcatggccagaaactgaagggtaagtggacgctggttcgcatgggcggccga
gccgcacgcgaagctaaaccaaattggcttctgattaaagaacacgacgaatatgagcgc
ggccccgaggagcaggcgattaccgagagcaagccggacagcgtggtcaccggtcgggat
atagaggcgatcggtacgcaagaagatcatgtctggcaatcgaaggagagcaagaagcgg
aatctatcgcgtttggctcaaaagcgcttgcgattcagggagagaacaacgcaagtcgac
gcccccgatcgttccaacgtgctgaacggaattccagaagaaaaaatgccggagttcatt
ccgccacatctggcggcgcaggtctccgttcctccggatggcgaggactggattcatgag
ttgaagctcgatggatatcgcattcagcttcatgtcgttgaggaagagcctggtaagcgc
aatgtcttcatctatacccggggtggtcttgactggacgcatcgcatgccggatatcgcg
aaagcggcagcagaattgccggtaaagagcgccttgattgatggtgaagtggtggtgctg
gacccctccggcaagactagctttgccgacctgcaggctgcatttcaggaagaaaaggac
gcccatctaacctacgtcgcgtttgatctgctgcacttggatggtcacaatgtgcgcgat
ctggctcttgatcagcggaaagcgattctagagggcttgctcggggagcttggtgatgac
agcatcctgcggttcagcgcgcatattcgtgctcgaggagaggaaacattcagaaatgca
tgcaagctgggagccgagggcatcatttcaaagctagcctcttcgaaatacagctccgga
cgtagtaaaacctggctgaaggcaaagtgcgtacatcagcaggagtttgtaatcgggggc
ttcacgccacccggagatggcgccgatggagtcggctcgctcttactcggctactaccag
gacggaaagctgatgtatgcgggacgaacgggaacgggctttacgcacgcgtcgcaaaag
gccttgagaaagcagcttgatgaactgcaacaatccaaggcgtcatttgcagagttgacc
gccgatgcgcggaaagacgccgtctgggtaaagcccgacctcgtggccgaggtgcaattc
gccacgtggactggcgatcatcgcgtgcggcaggcttctttccaagggctgcgagaagat
aagcccgctatggagattcgacgtgaggagcctattgctatgccaaagccttcccgcact
cgcaaagaaagttcccacaatgcgccggtagagaagacgagcagcaaagcaacgagcgta
atcggagacatgcggctgacgcatcccgagaagatactggacgatgagagcaacgtgacg
aagaagcagcttgcagaatactacttcgaaattgccgatcatttgttgccgttcatcgct
gggcgcccgttaagtatcgtgcgttgtcctgagggttgtggtaagccgtgtttctttcaa
aagcacgtaggacagggagtcgcaagagggatcgacagcgttttggttccaaacaagaaa
ggcgaagggtcagaggagtacatcacagtttcgactcaggaaggcttggttgggcttgca
cagatgggtgtacttgagatccatccctggggttcgcgcaacgattcgctagagacaccg
gaccaactcatcttcgacctcgatcccgatccggccgtcgagtggaagacactggttgag
ggcgcacatgaagtgcgagacgtattgaaagaactgaagctcgtatccttcgtgaagtcg
actgggggaaagggattgcatgttgttgtaccgatcgaaccaaaacacgaatgggctgac
gtaaaggaattcactcgcaatgtcgcgcgaatcctcgaagccaaccatcctgatcgatac
ctgatcaaaatgacgaaatcagcgcgcaaaggccgaatttttctggactacctgcggaac
gaccgaggctctacggccattgcttcgtattcgcctcgcgcaaggaaaggcgtgcgcgtt
gctatccctttgcaatgggaggaactgcacaagggcaatcccatcgagtacggtgtagca
aatttcaatacatggaagaagcgcttgaaaaatgacccgtgggaggacttttggcttacg
aaacaggcgcttagtgaaagggccgtgacagcagcggccaaccttgcagaatctgccgga
tag
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integrated database retrieval system