KEGG   Alloacidobacterium dinghuense: H7849_10660
Entry
H7849_10660       CDS       T08177                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
adin  Alloacidobacterium dinghuense
Pathway
adin03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:adin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H7849_10660 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:adin03400]
    H7849_10660 (ligD)
Enzymes [BR:adin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H7849_10660 (ligD)
DNA repair and recombination proteins [BR:adin03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H7849_10660 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S AA_synth mRNA_cap_enzyme PSK_trans_fac Peptidase_M29
Other DBs
NCBI-ProteinID: QNI34306
UniProt: A0A7G8BP36
LinkDB
Position
complement(2620251..2622953)
AA seq 900 aa
MARKKAKQVSPSDAVDEQLARYRAMRDFSMTAEPSGSRQKGSESELPFVIQKHAATRLHY
DFRLGWQGVLKSWAVAKGPSYYPGDKRLAVQVEDHPMEYGGFEGTIPKGQYGGGTVMVWD
QGTWEPQGDADEGFRTGRLKFVLHGQKLKGKWTLVRMGGRAAREAKPNWLLIKEHDEYER
GPEEQAITESKPDSVVTGRDIEAIGTQEDHVWQSKESKKRNLSRLAQKRLRFRERTTQVD
APDRSNVLNGIPEEKMPEFIPPHLAAQVSVPPDGEDWIHELKLDGYRIQLHVVEEEPGKR
NVFIYTRGGLDWTHRMPDIAKAAAELPVKSALIDGEVVVLDPSGKTSFADLQAAFQEEKD
AHLTYVAFDLLHLDGHNVRDLALDQRKAILEGLLGELGDDSILRFSAHIRARGEETFRNA
CKLGAEGIISKLASSKYSSGRSKTWLKAKCVHQQEFVIGGFTPPGDGADGVGSLLLGYYQ
DGKLMYAGRTGTGFTHASQKALRKQLDELQQSKASFAELTADARKDAVWVKPDLVAEVQF
ATWTGDHRVRQASFQGLREDKPAMEIRREEPIAMPKPSRTRKESSHNAPVEKTSSKATSV
IGDMRLTHPEKILDDESNVTKKQLAEYYFEIADHLLPFIAGRPLSIVRCPEGCGKPCFFQ
KHVGQGVARGIDSVLVPNKKGEGSEEYITVSTQEGLVGLAQMGVLEIHPWGSRNDSLETP
DQLIFDLDPDPAVEWKTLVEGAHEVRDVLKELKLVSFVKSTGGKGLHVVVPIEPKHEWAD
VKEFTRNVARILEANHPDRYLIKMTKSARKGRIFLDYLRNDRGSTAIASYSPRARKGVRV
AIPLQWEELHKGNPIEYGVANFNTWKKRLKNDPWEDFWLTKQALSERAVTAAANLAESAG
NT seq 2703 nt   +upstreamnt  +downstreamnt
atggctcgcaagaaagcaaagcaggtttctccttctgacgcagttgatgagcaactggca
cgttaccgtgccatgcgtgacttctcgatgactgccgaaccaagtggcagtaggcaaaag
ggaagcgaaagtgagttgccttttgtgattcagaagcatgctgcaacaaggctccactat
gactttcgccttggctggcaaggcgtgttgaagagttgggctgtggccaagggtccaagc
tattatcccggcgacaagaggcttgcagtgcaggtggaagaccatcccatggaatatgga
gggtttgagggcacaattcccaaagggcagtacggcggcggcacggtgatggtgtgggat
caaggaacctgggaaccccagggcgatgcggatgaaggcttccgtactggtcgattgaag
tttgtcttgcatggccagaaactgaagggtaagtggacgctggttcgcatgggcggccga
gccgcacgcgaagctaaaccaaattggcttctgattaaagaacacgacgaatatgagcgc
ggccccgaggagcaggcgattaccgagagcaagccggacagcgtggtcaccggtcgggat
atagaggcgatcggtacgcaagaagatcatgtctggcaatcgaaggagagcaagaagcgg
aatctatcgcgtttggctcaaaagcgcttgcgattcagggagagaacaacgcaagtcgac
gcccccgatcgttccaacgtgctgaacggaattccagaagaaaaaatgccggagttcatt
ccgccacatctggcggcgcaggtctccgttcctccggatggcgaggactggattcatgag
ttgaagctcgatggatatcgcattcagcttcatgtcgttgaggaagagcctggtaagcgc
aatgtcttcatctatacccggggtggtcttgactggacgcatcgcatgccggatatcgcg
aaagcggcagcagaattgccggtaaagagcgccttgattgatggtgaagtggtggtgctg
gacccctccggcaagactagctttgccgacctgcaggctgcatttcaggaagaaaaggac
gcccatctaacctacgtcgcgtttgatctgctgcacttggatggtcacaatgtgcgcgat
ctggctcttgatcagcggaaagcgattctagagggcttgctcggggagcttggtgatgac
agcatcctgcggttcagcgcgcatattcgtgctcgaggagaggaaacattcagaaatgca
tgcaagctgggagccgagggcatcatttcaaagctagcctcttcgaaatacagctccgga
cgtagtaaaacctggctgaaggcaaagtgcgtacatcagcaggagtttgtaatcgggggc
ttcacgccacccggagatggcgccgatggagtcggctcgctcttactcggctactaccag
gacggaaagctgatgtatgcgggacgaacgggaacgggctttacgcacgcgtcgcaaaag
gccttgagaaagcagcttgatgaactgcaacaatccaaggcgtcatttgcagagttgacc
gccgatgcgcggaaagacgccgtctgggtaaagcccgacctcgtggccgaggtgcaattc
gccacgtggactggcgatcatcgcgtgcggcaggcttctttccaagggctgcgagaagat
aagcccgctatggagattcgacgtgaggagcctattgctatgccaaagccttcccgcact
cgcaaagaaagttcccacaatgcgccggtagagaagacgagcagcaaagcaacgagcgta
atcggagacatgcggctgacgcatcccgagaagatactggacgatgagagcaacgtgacg
aagaagcagcttgcagaatactacttcgaaattgccgatcatttgttgccgttcatcgct
gggcgcccgttaagtatcgtgcgttgtcctgagggttgtggtaagccgtgtttctttcaa
aagcacgtaggacagggagtcgcaagagggatcgacagcgttttggttccaaacaagaaa
ggcgaagggtcagaggagtacatcacagtttcgactcaggaaggcttggttgggcttgca
cagatgggtgtacttgagatccatccctggggttcgcgcaacgattcgctagagacaccg
gaccaactcatcttcgacctcgatcccgatccggccgtcgagtggaagacactggttgag
ggcgcacatgaagtgcgagacgtattgaaagaactgaagctcgtatccttcgtgaagtcg
actgggggaaagggattgcatgttgttgtaccgatcgaaccaaaacacgaatgggctgac
gtaaaggaattcactcgcaatgtcgcgcgaatcctcgaagccaaccatcctgatcgatac
ctgatcaaaatgacgaaatcagcgcgcaaaggccgaatttttctggactacctgcggaac
gaccgaggctctacggccattgcttcgtattcgcctcgcgcaaggaaaggcgtgcgcgtt
gctatccctttgcaatgggaggaactgcacaagggcaatcccatcgagtacggtgtagca
aatttcaatacatggaagaagcgcttgaaaaatgacccgtgggaggacttttggcttacg
aaacaggcgcttagtgaaagggccgtgacagcagcggccaaccttgcagaatctgccgga
tag

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