Auricularia subglabra: AURDEDRAFT_148645
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Entry
AURDEDRAFT_148645 CDS
T03129
Name
(GenBank) TFIIH basal transcription factor complex, subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
adl
Auricularia subglabra
Pathway
adl03022
Basal transcription factors
adl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
adl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AURDEDRAFT_148645
09124 Replication and repair
03420 Nucleotide excision repair
AURDEDRAFT_148645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adl03021
]
AURDEDRAFT_148645
03400 DNA repair and recombination proteins [BR:
adl03400
]
AURDEDRAFT_148645
Transcription machinery [BR:
adl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AURDEDRAFT_148645
DNA repair and recombination proteins [BR:
adl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AURDEDRAFT_148645
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
DUF3526
CDC45
Motif
Other DBs
NCBI-ProteinID:
EJD53792
JGI:
148645
LinkDB
All DBs
AA seq
464 aa
AA seq
DB search
MPPRRNDADYMDVDSDSDVSLNLDDDDFVRPGRAAKPSAAKGKAKQSKKRTDKIKKKKAQ
DQSYSWEESYTRSWDAVQEDEAGSLQSAVEHLIARGRRRRRVALAASLLAPSDAIRRAII
RHVIIVLDMSSGMMDRDLRPTRFDLMLEYVREFVTEWFDQNPLGQIGIVGMRAGLAERVC
DMSGSPQDVLKSISERHKLEPTGDPSLQNALELSRASMSHLPSHSSREVLMIFGSITTVD
PGNIHDTLAACLEDKIRISIVALAAEMRICRELCEKSGGVFGVALNEGHFKDVMFELIPP
PAQRAAAKAAAGGGGTGADLLLMAFPVRLPESSAPTLCVCHLELKSEGFLCPRCFARVCD
VPTDCDVCGIMIVSSPHLARSYHHLFPVKAYTPVMTLEGEQQTSATCHGCSMAFQPHKAA
ASAGATAEGVSPLGRYRCPECQNDFCNECDIFVHDVLHVCPGDR
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgccgccccgacgcaacgacgcagactacatggacgtcgactcggactcggacgtctcg
ctcaacctcgacgacgacgactttgtgcgccccgggcgcgccgctaagcccagcgcggcc
aagggcaaggcgaagcagagcaaaaagcgcacagacaaaatcaagaagaagaaagcccag
gaccaatcatactcctgggaagagtcgtatacgcgttcctgggacgccgtgcaagaggac
gaggcgggcagtctccagagcgccgtcgagcacctcatcgcccgtggtcgcagacggagg
cgcgtcgcattggcagcatcgctgctcgcgccttcagacgccatccgccgcgcgattatc
cggcacgtaatcatcgtgctcgacatgtccagcggcatgatggaccgcgacctgcgcccg
acgcgcttcgacctcatgctcgaatacgtccgcgagttcgtcacagaatggttcgaccag
aaccccctcggccagattggcatagtcggcatgcgcgctggactcgcagagcgcgtttgc
gacatgtctgggagcccgcaggatgttctcaagtccatttcagaacgacacaagctcgag
cccactggcgaccccagtttgcagaatgctcttgagctctcgcgggcaagcatgagccac
ttgccctcccattcgtcgcgcgaagtcttgatgatcttcggttctatcaccactgtcgac
ccaggcaacatccacgacacactcgcggcatgcttagaggacaaaatccgcatctcaatt
gtcgcgctcgcagcagaaatgcgaatatgtcgtgagctgtgcgaaaagtcgggcggcgtc
ttcggcgtagcgctcaacgaaggccacttcaaagacgtgatgttcgagctaatcccgcca
cccgcccagcgcgcagcagcaaaggcggcggcgggaggcggtgggaccggcgcagacctg
ctgttaatggcgttccctgtgcggctgccggagtcgtcggcgccgacgctgtgtgtgtgc
cacctggagctcaagagcgagggcttcctgtgcccgcgctgcttcgcgcgcgtgtgcgac
gttcccaccgattgcgacgtgtgtggcattatgattgtcagctcgccgcatctcgcgcgc
agctaccaccacctcttccccgtcaaggcgtatacgcccgtaatgacattagaaggcgag
caacagacatcggccacttgccatggctgctcgatggcgttccagcctcacaaagcagca
gcatcagcaggcgccacagcggagggagtgagcccgctgggtcgataccgctgcccagag
tgccagaacgacttttgcaacgagtgcgacatcttcgtgcatgacgtattgcatgtctgt
cctggtgaccgttga
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