Auricularia subglabra: AURDEDRAFT_183647
Help
Entry
AURDEDRAFT_183647 CDS
T03129
Name
(GenBank) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
adl
Auricularia subglabra
Pathway
adl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
adl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AURDEDRAFT_183647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adl03400
]
AURDEDRAFT_183647
Enzymes [BR:
adl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AURDEDRAFT_183647
DNA repair and recombination proteins [BR:
adl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
AURDEDRAFT_183647
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
DNA_ligase_A_C
PTCB-BRCT
Solute_trans_a
SKA1
Motif
Other DBs
NCBI-ProteinID:
EJD47877
JGI:
183647
LinkDB
All DBs
AA seq
1038 aa
AA seq
DB search
MPLPTPAPSSPGTLAGDDELQNDGQEVVIEAPENAGTYPEFGALCALLDRLQKERRQEMR
RTLLQKWFALWRERVGPDLYPLLRLLLPQKDRERAVYNIKEKTLAKAFIKALGLDPKAPD
SMRLMNWKKPTEKGKTAGDFPTVLYEVVSKRSSVMRGTMRVDQVNACLDDLAACAGKLDK
IMHAVRRISDATTPSEQRWIVRIILKDLIISVKETTILSVFHPDALSLFNTCSDLKRVAH
QLWDENCRLNDQDKGVQLFRCFAPMLCKRPTKSLEETVALMKGAKFIIEEKLDGERIQVH
KRGNEYLYYSRKGKDYTYLYGKTVSSEKASLTPYLHKAFRGDVRDCILDGEMLVWDPVSE
KLMPFGHLKTAALGNARELTNPRPCFKIFDILYVNGKSLLDKKLSQRKRLAHEIIKENKG
RVEFSYQDEGHTAKEIRDALQKVMEERGEGLVIKHPDSQYQLNGRVSDWIKVKPEYMDDM
GETVDVLVVGGNYGSGKRGGGVSTFVCAVIEDRDNSEDDTKYSTFVRIGSGFTYGDYLSI
RAKPWKPWGKKGPSWLITAPTGQDDKADVYLDPEESFVVKVKAAEITKTDQYGMKLTMRF
PRAVRIRDDLDWTQCMTASDILEMTASTSKKRKAEDDPEGSKKKRKTVKKPSALSQAFKG
ADTTNILVTSDIFAGMKFHVLDNPRVVDQKKSLETLIKQHGGAFCQKPLAREVTSVFRVF
GGSDQKPPLRVANIINEDSSDILRPSYIFDSVERNERLPLSKKYFFHRAGGKSRTEEEEA
EYQQDDEAAQASDDAMDASASVDLRNSVHPVKRESVEPELDPSLSQYSEWVSVSDGEKAK
QTRHKNDPADESETEDESSWEAADDDEQTDEWEMLSSGRLNESIVNREATLEGDDVQFTP
TVKQAAILPLAEKVAAKMGEDDSAMEYDPDIIFKHLCFYLDTPANARRNGMDVSSNLEAQ
ITDDLDEIQKMIEDNGGKIVDLTDPKLTHVIVDKRDYTRMRELRKRTSKPKQRQLVQSDF
IRAAVDAETLPDEDGFRP
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgcccctacccacgccggcgccgtcctcgccgggcacactcgcgggagacgatgagctg
cagaatgacgggcaggaagtcgtcatcgaagcgcccgagaacgcgggcacgtacccggaa
ttcggagcgctctgtgcgctgctggaccgactgcagaaggagcgcaggcaggaaatgcgc
cggacgctgctccagaagtggtttgccctgtggcgcgagcgtgtcggtccggacttgtac
ccactcctgcgcctgctcctgccccagaaagaccgcgagcgcgcagtatacaacatcaag
gagaagacgctcgccaaagcgttcatcaaggctctcggactcgaccccaaggccccggac
tccatgcgcctcatgaactggaagaaaccgacagagaagggcaaaacggcgggcgacttc
cccaccgtgctctacgaagtcgtctccaagcgctcgtccgtcatgcgcggcaccatgcgt
gtcgaccaggtcaacgcctgcctcgacgatctcgcggcctgcgctggtaaacttgacaag
attatgcatgctgtccgacgtatcagcgacgcgactacgccgtccgagcagcgttggatc
gtccgtattatcctgaaagacctcattatctccgtgaaggagactactatcctctccgtc
ttccacccagacgcgctgtcgctgttcaacacctgctcagacctgaagcgcgtcgcgcac
cagttgtgggacgagaactgtcgtttgaatgaccaggacaagggcgtgcagttgttccgc
tgctttgcgcccatgctttgcaaacgtccgactaagagtctcgaggaaactgtggcgctt
atgaagggtgccaagttcatcattgaggagaagctggacggcgagcgcatccaggtgcac
aagcgcgggaatgagtacctttactactcgaggaaaggcaaggattacacgtacctgtac
ggcaagaccgtcagctcggagaaggcgagcctcacgccgtacttacacaaggcgttccgc
ggtgacgtgcgcgattgcattttggacggggaaatgctcgtgtgggatccggtcagtgag
aagctcatgccgttcggtcacctcaagacggcagctttgggtaatgccagagaactcacc
aatccacgtccatgcttcaagattttcgatatcctctacgtcaatggcaagtctctgctg
gacaagaagctttcgcagcgcaagagactggcgcacgagatcatcaaggagaacaagggt
cgtgtcgagttctcctatcaggacgaaggacacactgcgaaggaaattcgagacgctctg
cagaaagtcatggaggaacggggcgaggggctggtcataaagcatcccgattcgcagtac
caactgaacggccgcgtgagcgactggatcaaggtcaagcccgagtacatggacgatatg
ggcgagactgtcgatgtactcgtcgtcggtgggaattatggctctggaaagcgtggtgga
ggcgtctcgacctttgtctgcgccgtcatcgaggatcgcgacaactcggaagacgacacc
aagtactcgacgttcgtgcgcatcggttccgggttcacgtacggcgactacctgtccatt
cgcgcgaagccctggaagccgtggggcaagaaaggaccttcctggctgattactgcgcct
accggccaggatgacaaggccgacgtatacctcgaccccgaagagtcgttcgtcgtgaaa
gtcaaggcggcagagatcactaagactgatcagtacggcatgaagctgaccatgcgcttt
ccgcgtgcggtgcgcatccgcgacgatctggattggacgcaatgcatgaccgcgtctgat
atccttgagatgaccgcgtcgacctcgaagaagcgcaaggcagaagatgacccggaagga
tcgaagaagaagcggaagactgtgaagaaaccctccgcattatcgcaggccttcaaggga
gcagacacaacgaatatcctggtcacatccgatatcttcgccggcatgaaattccatgtg
ctcgataacccgcgcgtggtggaccagaagaagtcgcttgagaccctgatcaagcagcac
ggtggcgctttctgccagaagccgttggctcgggaggttacgtccgtattcagagtgttc
ggcgggtcggaccagaagccacccctcagagtggccaacatcataaacgaggactcgtct
gacatcctgcggccgagctacatcttcgactctgtggagcgcaacgaacggctgccgttg
agcaagaaatacttcttccacagagcaggtgggaaatctcgtacagaggaagaagaagcg
gaatatcagcaagacgacgaggctgcacaggcaagcgacgacgccatggacgcgagtgct
agcgtcgatctgcgcaattccgtgcatcctgtgaagcgcgagagcgttgagcctgagctc
gatccttcgttatcgcagtactccgagtgggtgtccgtgagcgacggcgagaaggccaag
cagacgaggcacaagaacgaccctgcggacgagtccgagacggaagacgagtcttcgtgg
gaggcggccgatgacgatgagcagaccgacgagtgggagatgttgagctctggcaggctc
aacgagtcaatagtgaatcgcgaagcgactctggagggcgatgacgtccagttcacaccg
accgtaaagcaggcagccattttgccgttagcagaaaaggtcgctgccaagatgggcgaa
gacgattctgccatggagtacgaccccgatatcatattcaaacacttatgtttctacttg
gatacacctgcaaatgcacggcggaatggcatggacgtcagctccaatcttgaggctcaa
atcacggacgacttggacgaaatccagaagatgatagaagataacggagggaagattgtt
gacctgacggacccgaagttaacccatgtcattgtcgacaagcgagactacacacgaatg
cgcgagttgaggaagaggaccagcaagccgaagcagaggcagctagtacaatccgacttt
atcagagccgcggtggatgcggagacgctgccagatgaggatggattccggccctga
DBGET
integrated database retrieval system