Actinobacillus delphinicola: NCTC12871_00168
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Entry
NCTC12871_00168 CDS
T06572
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
adp
Actinobacillus delphinicola
Pathway
adp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12871_00168 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adp03019
]
NCTC12871_00168 (rnr)
03016 Transfer RNA biogenesis [BR:
adp03016
]
NCTC12871_00168 (rnr)
Enzymes [BR:
adp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12871_00168 (rnr)
Messenger RNA biogenesis [BR:
adp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12871_00168 (rnr)
Transfer RNA biogenesis [BR:
adp03016
]
Prokaryotic type
tRNA degradation factors
NCTC12871_00168 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
VEJ08753
UniProt:
A0A448TSE8
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All DBs
Position
1:complement(175894..178338)
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AA seq
814 aa
AA seq
DB search
MKTVKKQNKKTVSAVKKFKDAALIDPNLAREQQKYANPVPSREFILQIMREYNAPISRAE
LLDILQIDDEDRKEGLRRRLRAMENEGQVIFTKGKRFALPEKLDLIKGEVIGHRDGYGFL
QVDGLKKDLFIPNHQMRGVIHGDIVLAQPNGFDRRGRQEVRIVRVLEERKQQIVGRFFLE
NGLGYVVPDDNRIQRDILIPDNARRHARMGQVVVVRLQSRNAGFGQLVGEITEVLGDNMA
KGMETEIAIRRYDIPHEFPKAVLKQSQQWGESVPDEAKQNRADLRNLPLVTIDGEDARDF
DDAVYCQAEKGGWRLWVAIADVSYYVRPNSSLDKEAHNRGNSVYFPSRVVPMLPEVLSNG
LCSLNPQVDRLCMVCEMAIDKEGQIKDYKFYEGVMNSFARLTYNKVAKILVDKDEELCER
YANLVPHLSDLYDLYKALLTAREQRGTIDFETIESKFIFNEMGRIERIEPVVRNDAHKII
EECMIAANICAANFVEKHKEPALFRVHAKPSEEKLKAFREFLGELGLGLQGGDDPTTEDF
AELLEAARNRPDYELIQTMLLRSLSQAIYSAENEGHFGLALQEYAHFTSPIRRYPDLTLH
RGIKYVLAKGKGLKRKTTDTGGYHYSFDEMDALGDHCSMTERRADDATRDVADWLKCEFM
QDHVGGEYTGVIASVTSFGLFVRLDELFIDGLVHISSLRNEYYQYDAASQRLIGENSGMV
YRLGDRVKVKVIGVNLEARQIDFELLDSARGVRNSGKTAKKRFKELANKETQQAAFKKNA
KANKKKSTSKVRATKKSASKSRTKVSKKSRAKKA
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacagtaaaaaaacagaataaaaaaaccgtaagtgcggttaaaaaatttaaggac
gctgcacttatagacccaaatcttgcacgtgaacagcaaaaatatgcaaatcccgtgcca
agtcgagaatttattttacaaattatgcgtgagtataacgccccgatttcccgtgcagaa
ttattagatattttgcaaatcgatgacgaagatcgtaaagaagggctacgtcgtcgatta
cgtgcaatggaaaacgaagggcaagttattttcacaaaaggcaaacgttttgcattacct
gaaaaattagatcttattaaaggtgaagttatcggtcaccgtgatggttatggcttttta
caagtagatggattgaaaaaagatctttttattcctaaccaccaaatgcgtggcgttatc
catggcgatatcgtgttagctcagccaaatggttttgatcgacgtggtcgccaagaagtg
cgtatcgtccgtgttttagaagaacgtaaacaacaaatcgtaggacgttttttcctagaa
aatggcttaggttacgtcgtgccagatgataaccgtattcagcgggatatcctcattcct
gataatgcacgccgtcatgctcgcatggggcaagttgttgtcgtacgtttgcaatcacgt
aatgcaggttttggacaactcgtgggagaaattaccgaagtgctaggcgataatatggca
aaaggcatggaaactgaaatcgccattcgtcgttatgatattccacacgaatttccaaaa
gccgtattaaaacaaagccagcaatggggcgaaagtgtccctgatgaggcaaaacaaaac
cgtgccgatttacgtaatttaccattagtcaccattgatggtgaagatgcacgcgacttt
gatgatgccgtatattgccaagctgaaaaaggtggctggcgattatgggtagcgattgca
gatgtgagttattatgttcgtccaaattcatctttagataaagaagcacataatcgagga
aattccgtttatttcccaagtcgggtagtgccaatgttgcctgaagtgttatcaaatggc
ttatgttcactaaacccacaagtcgatcgactttgtatggtttgtgaaatggcgattgat
aaagaagggcaaattaaagattacaaattctatgaaggcgtaatgaattcgtttgcacgt
ttaacgtataacaaagtggcaaaaattcttgtcgataaagacgaagaattatgcgaacgc
tatgcaaacctcgtgccacatttatctgatctttacgatttatataaagcccttttaact
gcacgtgaacaacgtggcacaatcgattttgaaactattgaaagtaaatttattttcaat
gaaatgggacgtattgagcgtattgagcctgtcgtacgcaatgatgcgcataaaattatt
gaagaatgtatgatcgctgcgaatatttgtgcagcgaactttgttgaaaaacacaaagaa
cctgcattattccgtgtgcatgcaaaaccaagtgaagaaaaacttaaagccttccgtgaa
tttctaggggaattaggtttaggtttacaaggcggtgacgatccaacaacagaagatttt
gctgaattgctagaagctgcacgcaatcgtccagattacgaattaatccaaacgatgcta
ttacgctctctaagtcaagcgatttactcagcagaaaatgaaggacactttggattggcg
ttacaagaatatgcacatttcacctcaccaattcgtcgttatccagatttaaccttacac
cgtggcattaaatatgtgttagcaaaaggaaaaggattaaaacgtaaaacgaccgacact
ggcggttatcattacagttttgatgaaatggatgcgctaggcgatcattgttccatgaca
gaacgtcgtgctgatgacgcaacccgtgatgtagcagattggttaaaatgcgaatttatg
caagatcacgttggtggcgaatatacgggtgtgattgcgtcggtaaccagtttcggatta
ttcgttcgtcttgatgaattgttcattgatgggttagtgcatatctcaagtttacgtaac
gaatattaccaatatgatgctgcatctcaacgccttatcggtgaaaattcaggtatggta
tatcgccttggtgatcgcgttaaagtcaaagtaattggtgtaaacttagaagcacgtcaa
attgactttgaattgttagacagtgcacgtggggtgcgtaattctggaaaaacagcaaaa
aaacgttttaaagagttagcaaataaagaaacccaacaagcggcctttaaaaagaatgcg
aaagcaaacaagaaaaaaagtacgagtaaagtaagagcaacgaaaaagtcagcatcaaaa
tctcgtacaaaagtgagtaaaaaaagccgagcgaaaaaagcttag
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