Achromobacter deleyi: HLG70_07855
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Entry
HLG70_07855 CDS
T07788
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ady
Achromobacter deleyi
Pathway
ady03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ady00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HLG70_07855 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ady03400
]
HLG70_07855 (ligD)
Enzymes [BR:
ady01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HLG70_07855 (ligD)
DNA repair and recombination proteins [BR:
ady03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HLG70_07855 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QVQ28315
LinkDB
All DBs
Position
complement(1740799..1743330)
Genome browser
AA seq
843 aa
AA seq
DB search
MADSLKKYREKRNFGVTSEPAGGGEANEGARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPSYDPAVKRMAVQVEDHPIAYNQFEGQIPKGQYGAGKVIIWDEGKWEPVGDPRKGYR
EGHLKFDLQGVKMQGRWALVRLKGKESEKQPPWLLIKDRDDFARPEREFSVVDEMPDSVV
PLRGSGAGAKQSKRRQAPAADNAAAALPGEAAELPKLLKPQLATLVDAVPRHAEDWLYEM
KFDGYRLMIRIDGADVRLYTRNGHDWSAKLPHLVEAFRELPAKSAWVDGEIVILDKTGVP
SFQALQNAFDGERTQDIIFYAFDLPFIGGRDLRREPLRLRRALLAQLMETAADDERLRFS
EAFDAAPANLVASACKMGLEGIMAKRQSAPYVSRRTDSWVKVKCAQRQEFAIVGYTAPKG
ARVGLGALLLAVHEADGKLRYAGKVGTGFDDQGLAELQKRLARIKTDERPVAGGGTGKDV
HWVAPELVAEVSFGGWTSSGHIRHSVFRGLRQDKPVRAISREKAVPVEQVEAQPDPAPAA
SPARASRSASAARPQARKLTNPDRVIDPSTKLTKLDLARYYGLIAPLLLEHLKGRPVSFL
RAPGGIQEEFFFQKHLEAAMPGVKALPAKLDPDHPPLLEVPTQEAIMSAVQMNVVEFHTW
NAVKTSIGKPDRMLFDLDPGEGVEWAAMQQAAHLVHVLLQEIGLQAWLKTSGGKGLHVVV
PLRKQYGWDTVKAFSHAIVSHLAQTLPQLFVAKSGPKNRVGKIFADYLRNGFGATTVAAW
SARARPGLGVSVPVAWEELEKITGGAQWTIGNIHARLDAGNDPWSGYAPQAAGRAMAAMD
FEP
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcgctaaagaaataccgcgagaagcgcaatttcggcgtgacatcggaaccc
gcgggcggcggcgaggccaacgagggcgctcgcgccttcgtcatccagaagcactgggcc
agccggttgcactacgacttccggctggaactggatggcgccatgaagagctgggccgtg
cccaaagggcccagctacgatccggccgtcaagcgcatggccgtgcaggtcgaagatcac
cccattgcctacaaccagttcgaaggccagattccaaaaggccagtacggcgccggcaag
gtcatcatctgggacgagggaaaatgggagccggtcggggatccgcgcaagggctatcgg
gaaggacacctgaagttcgacctgcagggcgtcaaaatgcagggccggtgggcgctggtg
cgcctcaagggaaaagagtctgaaaagcagccgccctggctgttgataaaggacagggac
gattttgcccggcccgagcgcgagttcagcgtcgtggacgagatgcccgacagcgtggtc
cccctgcggggttcaggggctggcgcgaaacaatccaagcgcaggcaggcgcctgcggcg
gacaacgctgcggccgctctgcccggcgaggcggccgaactgcccaagctcctcaagcct
cagctcgcgacattggtggatgccgtcccgcgccacgccgaggactggctatatgagatg
aagttcgacggctataggctgatgatccggatcgacggcgccgacgtgcgtctctacacc
cgcaacggccatgactggagcgcgaagctgccgcatctggtcgaagccttccgcgagttg
cccgcaaagtccgcctgggtcgacggggagatcgtcattctggacaagaccggcgtgccc
agctttcaggcgctgcagaatgccttcgacggcgaacgtacccaggacatcatcttctat
gccttcgatctgccgttcatcggcgggcgggatctgcggcgcgagcccttgcgcttgcgg
cgggcgctgctggcgcaactgatggaaaccgcggcggatgatgagcgcctgcggttcagc
gaggctttcgacgcggcgcccgccaatctggtggcgtccgcctgcaagatgggtctggag
ggaatcatggccaagcgccagtcggcgccttacgtgtcgcgccgcacggacagctgggtc
aaggtcaagtgcgcccagcgccaggagttcgccatcgtcggctacacggcgcccaagggc
gcgcgcgtggggctgggcgcgctgctgctggccgttcatgaggccgacggaaaactgcgc
tatgccggcaaggtcggcaccggattcgacgaccagggcctggccgaactgcagaagcgc
ctggcgcgcatcaagacggacgaacggcccgtggcgggcggtggcacgggcaaggatgtg
cattgggtggcgcctgagttggttgccgaagtctcttttggcggctggaccagctctggc
cacatccgccattcggtatttcgcggcttgcgccaggacaagccggtacgagcgatctct
cgcgagaaggcggttcccgtcgaacaggtcgaagcgcaaccggatcccgcgccagccgcc
tcgccggcacgcgcatcgcgctccgcttcggcggcgcgcccgcaggcccgcaagctcacc
aatccggatcgcgtcatcgacccctccacgaagctcaccaagctggatctggcgcggtat
tacgggctgatagcgcctctgctgctagagcacctgaagggccgacccgtttcgttcttg
cgcgcgccaggcggcatccaggaagagttcttctttcagaagcacctggaggccgccatg
ccgggcgtgaaggcgctgcccgccaaactggaccccgaccacccgccgctgctggaggtg
cccactcaggaagccatcatgtccgccgtccagatgaatgtcgtggagtttcacacctgg
aatgccgtgaagacctccatcggcaaacccgatcgcatgctgtttgacctggatccgggg
gagggcgtggaatgggcggcgatgcaacaggccgcgcacctcgtgcatgtgctgctgcaa
gagataggcctgcaagcctggctgaagaccagcggcggaaagggcttgcatgtggtggtg
ccgctgcgcaaacaatacggttgggacacggtcaaggcgttttcgcatgcgatcgtttcg
cacctggcccaaacgctgccacagctgttcgttgccaagagcgggccgaagaatcgggtc
ggcaagatcttcgccgactacctgcgcaacggctttggggccacgacggtggcggcgtgg
tcggcgcgcgcccggccgggcctgggggtttccgtgccggtggcatgggaagaactggaa
aaaatcaccgggggcgcgcaatggaccatcggcaatatccacgcgcgtctggacgccggc
aatgatccttggtcaggctatgcgccgcaagccgccggccgggccatggccgcgatggat
ttcgaaccgtga
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