Aeromonas sp. ASNIH3: C2U39_12925
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Entry
C2U39_12925 CDS
T05427
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aea
Aeromonas sp. ASNIH3
Pathway
aea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U39_12925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aea03019
]
C2U39_12925
03009 Ribosome biogenesis [BR:
aea03009
]
C2U39_12925
Enzymes [BR:
aea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2U39_12925
Messenger RNA biogenesis [BR:
aea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U39_12925
Ribosome biogenesis [BR:
aea03009
]
Prokaryotic type
rRNA helicases
C2U39_12925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
AUV12983
UniProt:
A0A2I8R3S6
LinkDB
All DBs
Position
complement(2713000..2714931)
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AA seq
643 aa
AA seq
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MLAACLNLEESMSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLL
GQAQTGTGKTAAFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAHHMPDFHVL
PIYGGASYETQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFI
DDVDWIMDQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQV
TGLHKLDAMTRLLEVESYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERT
VDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAIL
FVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMGEELEIYHNLV
NELIEEDSADPLELAAALAKLVQGDQPLLLDDSIPDPVFNAGNDRGGFERREFNDRGGRD
FGDRGDRPARRMPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRF
IGNIDIADDFSTVDLPKGMSAEVLEVIKKARVCQRPLQITRYTEVPAGGNTAPRPPRGDR
PFRGDRPFNKDRRPQGDRPFNKDRREGGFDKGRKFGGNKRRDS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
gtgttagccgcctgccttaatctggaagaatctatgtctgataccgaacaactgcccctt
tttagtgagcttggactggccgcgcccgtattgaaagcgctgcaggacgtgggctatgag
cgcccgtctcccatccaggccgcagcaattccccacctgatggcgggacacgatctgctg
gggcaggcacaaaccggtacagggaagaccgctgcttttgccttgcctctgttgtctcgt
ctggaagctggtaaccgcaacacccagatcctggtgctggccccgacccgcgagctggcc
ctgcaggtggcagaggcgtgccaacgctatgcccaccacatgcccgatttccacgtgctg
cccatctacggcggcgcttcctacgaaacccagacccgcgccctgcgtcgcggtgcccag
gttgtcgtgggtaccccgggccgcgtgatggacctgatccgtcgcaagaacctggacctc
tccggtctgaaagccctggtgctggatgaagcggacgaaatgctgcgcatgggcttcatc
gacgacgtggactggatcatggatcagtgcccggccggtcgtcaggttgccctgttctct
gccaccatgccggagcagatccgtcgtgttgcccagaagcacctgaagcagcccaaagag
atcaagatcgcctccaagaccgcgaccgccaccaccattcgccagcgttactggcaggtg
accggtctgcacaagctggacgccatgacccgtctgctggaagtggaatcctacgaagcc
ctgctggtgttcgtgcgtaccaagaacgccgccgaagagctggcaggcaagctggctgcc
cgtggtcacgcctgtgaagcgctgcacggtgacatcccgcagaaactgcgtgagcgtacc
gttgacaagctgcgtcagggccagctggacatcctgatcgccaccgacgtggtcgcccgc
ggtctggacgttgagcgcatcacccacgtagtgaactacgacattccctacgacaccgaa
tcctacgttcaccgtatcggccgtaccggccgtgccggtcgcaagggtgaagccatcctg
ttcgtggcgccgcgcgagcgccgcatgctgcgtgccatcgagcacgccactcgtcaagcc
atcgagccgatgaagatgccgagcaccgaggacatcaaccagcaccgtctggccaagttc
aaggagcgcatccgcgaaaccatgatgggtgaagagctcgagatctaccacaacctggtg
aacgagctgatcgaagaagattctgccgatccgctggagctggctgccgcactggccaag
ctggtacagggcgatcaaccgctgctgctggatgactccatcccggatccggtgttcaac
gccggcaacgatcgcggtggcttcgagcgtcgtgagttcaacgaccgtggcggtcgtgac
ttcggtgaccgtggcgatcgtccggcccgtcgcatgccgtccctggagccgcgtccgctg
aaagacaacccggatgtggagatggagcgctaccgcgtcgacgtgggcgcccatcacggc
gtcaagccgggccagatcgtgggtgccatcgccaacgaagcgaacatcgagagccgcttc
atcggcaacatcgacatcgccgatgacttctccaccgtcgatctgcccaagggcatgagc
gccgaggtgctggaagtgatcaagaaggcccgtgtctgccagcgtccgctgcagatcacc
cgttacaccgaagtgccggccggtggcaacactgctccccgtccgccccgtggtgatcgt
ccgttccgtggcgaccgtcctttcaacaaggatcgccgtccccagggtgaccgtcccttc
aacaaggatcgccgtgaaggcggtttcgacaagggtcgcaaattcggtggcaacaagcgc
cgcgacagctaa
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