Aeromicrobium sp. A1-2: C6I20_11995
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Entry
C6I20_11995 CDS
T05642
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aeb
Aeromicrobium sp. A1-2
Pathway
aeb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aeb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C6I20_11995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aeb03400
]
C6I20_11995 (mfd)
Enzymes [BR:
aeb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6I20_11995 (mfd)
DNA repair and recombination proteins [BR:
aeb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C6I20_11995 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AXT85835
UniProt:
A0A3B7D6K2
LinkDB
All DBs
Position
complement(2453802..2457311)
Genome browser
AA seq
1169 aa
AA seq
DB search
MTLQPLADLVATEPTLVQTLADRRDGLQELDLQAPEPLRPFLAYALAQQSTVLAVAATAR
EAEDLTTQLGGLLGADAVAYFPAWETLPHERLSPRSDTVGRRLAVLRRLVHPTEAGPADS
STATGPLRVVVAPVRSLLQPQVKGLADLTPVELHKGDDVALDDVVQRLAGAAYSRVDLVE
RRGEFAVRGGIIDVFPPTEEHPLRIEFWGDTVDEIRRFAVADQRTLEEVTHVWAPPCREL
LLTDDVRARAADLAVAHPSLAEIFTKISLGHAVEGMESLTPVLTNEMENLVALFPPRSSI
LVMDPERVKARAADLVATSEEFLQASWAAAATGAEAPIDLGSAAFHSLDDVRLETLGLGH
TWFTQSPFGLDLDEQTRTVHLEAAPAYRGDTAAALADIKAWIAVDRRVVFVAPGHGQAQR
TLEWLAENDVAAALDDEVTGPSPRVVQISCGELDHGLVSVPLGLVVLTYDDLVGQRAADR
SERKMPARRRKQVDPLELKAGDFVVHEQHGLGRYVELMQRVVQGAAREYLVVEYAPSKRG
QPADRLFVPMDQLDQISRYVGGESPTLDRLGGSDWTTRKNKARKAVRQIAGELIKLYAAR
QATKGHAFGPDTPWQAELEDAFAFVETPDQMVTIDEVKRDMERTVPMDRLVCGDVGYGKT
EIAVRAAFKAIQDGKQVILLVPTTLLVQQHYATFAERFGQFPVTMKPLSRFQTDKESKET
LAGLADGSIDMVIGTHRLLQPGVKIKDLGLVIVDEEQRFGVEHKEAMKMLRAAVDVLSMS
ATPIPRTLEMAITGIREMSTIATPPEERHPVLSFVGAYEDRQIVAAIRRELLREGQAFYI
HNRVQSIDKAVAKIKELVPEARVAAAHGQMGEHQLEEVMVDFWEKRYDVLVCTTIVESGL
DVSNANTMIIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPPEKPLTETAHDRLATIAQ
HSELGGGMAVAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFRGDAEPERE
VKIELPIAAHLPHEYVQSERLRLEMYKRLADVRLLADVDELRSELVDRYGEPPEEVEMLL
DVARLRVRVRDAGLTEVTAAGPNVRFAPLKLPDSAQMRLQRIYPRSTYKVAAEVALVPRP
RTAPVGGSPLVGRELLDWTRTVVDTLVPA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgcagcctctcgcggatctcgtcgccaccgaacccaccctcgtacagacactc
gcggaccgacgggacgggctccaagagctcgacctccaggcccccgagccccttcgcccg
ttcttggcgtacgccctggcccagcagtcgaccgtgctggccgtggccgcgaccgcccgc
gaggccgaagacctgacgacccagctcggcgggctcctcggcgccgacgccgtggcgtac
ttcccggcgtgggagacgctgccacacgagcgactgtcgccgcgctcggacaccgttgga
cgccggttggccgtgctgcgtcgactggtgcatccgaccgaggccggcccagctgactcg
tcgaccgccacaggaccgctgcgtgttgtggtcgcaccggtgcggtccctgctgcagccg
caggtcaagggcctggccgatctgaccccggtcgagctccacaagggcgacgacgtcgct
ctggacgacgtcgtgcagcggctggccggtgcagcgtactcacgcgtcgacctggtcgaa
cgacgcggcgagttcgccgtgcgtggcggcatcatcgacgtgttcccgccgaccgaggag
cacccgctccggatcgagttctggggcgacacggtcgacgagatccgccgcttcgcggtg
gccgaccagcgcaccctcgaggaggtcactcatgtgtgggcgccgccgtgtcgcgagctg
cttctgaccgatgacgtccgtgcgcgcgccgccgatctcgcagtagcgcacccttcgctg
gccgagatcttcaccaagatctccctgggccacgcggtcgagggcatggagtcgctgact
ccggtcctgaccaacgagatggagaatctggtcgccctgttcccgccgcggtcgtcgatc
ctggtcatggatcccgagcgggtcaaggcccgtgcggccgatttggtcgcgacgagcgag
gagttcctgcaggcatcgtgggccgcggcagccaccggcgccgaggcgccgatcgatctg
ggctccgcggcattccactcgctcgatgacgtccggctggagaccctcggcctcggccac
acctggttcacccagtcgccgttcggtctggacctcgacgagcagacgcgcaccgtgcac
ctggaggcggcgcctgcctaccgtggtgacaccgccgccgcgctggcggacatcaaggcg
tggatcgcggtcgaccggcgcgtcgtgttcgtcgcgccgggtcatggccaggcccaacgc
acgctggagtggctcgccgagaacgacgtcgccgccgcgctcgacgacgaggtcaccggc
ccgtcgccacgcgtcgtgcagatcagctgcggagagctcgaccacggtctggtgtcggtg
ccgctgggcctggttgtcctgacgtacgacgatctcgtcggccagcgtgctgctgaccgg
tccgagcgcaagatgccagcccgtcggcgtaagcaggtcgacccgctggagctcaaggcc
ggtgacttcgtggtccatgagcagcacggcctgggccgctacgtcgagctcatgcaacgg
gtcgtgcagggtgcggcccgtgagtacctcgtcgtggagtacgcgccgtccaaacggggg
caacccgccgaccggctgttcgtcccgatggaccagctcgaccagatcagccgctacgtc
ggcggcgagtccccgaccctcgatcggctgggtggctcggactggacgacgcgcaagaac
aaggcccgcaaggcagtacgccagatcgctggcgagctgatcaagctctacgccgcgcgg
caggcgaccaaggggcacgccttcggtccggacaccccgtggcaggccgagctcgaggac
gccttcgccttcgttgagacacctgaccagatggtcacgatcgacgaggtcaagcgcgac
atggagcggacggtcccgatggaccggctggtgtgcggtgacgtcggctacgggaagacc
gagatcgccgtgcgcgcagcgttcaaggcgatccaggacggcaagcaggtcattctgctg
gtcccgacgaccctgttggtgcagcagcactacgcaaccttcgcggagcggttcggccag
ttcccggtcacgatgaagccgctgtcgcggttccagaccgacaaggagtccaaggagacg
ctcgcgggcctcgccgacggctcgatcgacatggtcatcggcacgcaccgactgctgcag
cccggcgtcaagatcaaggacctcggtctggtgatcgtcgacgaggagcagcggttcggc
gtcgagcacaaggaagccatgaagatgctccgcgcggccgtggacgtgctgtcgatgtcg
gcgacgccgatcccgcgcacgctcgagatggcgatcaccgggatccgcgagatgtccacg
atcgcgacaccgccggaggagaggcaccccgtgctgtcgttcgtcggggcatacgaggac
cggcagatcgttgctgcgatccggcgggagcttctgcgcgagggccaggcgttctatatc
cacaaccgggtgcagagcatcgacaaggccgtcgccaagatcaaggagctcgtgcctgag
gcgcgggtcgcggcggcgcacggccagatgggggagcaccagctcgaggaggtcatggtc
gacttctgggagaagcgctacgacgtgctggtctgcaccacgatcgtcgagtcggggctc
gacgtctccaacgccaacaccatgatcatcgagcgcgccgacacgctcgggctctcgcag
ctgcatcagctccgtggccgggtcggtcgctcgcgcgaacgggcatacgcctacttcctc
tacccgccggagaagccgctcaccgagaccgcgcacgaccggctcgcgacgattgcccag
cattccgagctcggcggcggcatggcggtcgcgatgaaggacctcgagatccgtggtgct
ggcaacctgctcggtggcgagcagtccgggcacatcgccgacgttggcttcgacctgtac
gtccggctcgtgggggaggcggtcgcggagttccgcggcgacgccgagcccgagcgcgaa
gtcaagatcgagctgccgatcgcggcgcacctgccccacgagtacgtccagagcgagcgg
ctccgcctcgagatgtacaaacgactcgcggacgtccgtctgctggccgatgtcgacgag
ctgcgctccgagctggtcgaccgctacggcgagccgcccgaagaggtcgagatgctgctc
gatgtggcccgcctgcgcgtccgcgtgcgggacgccggcctgaccgaggtcacagccgcg
gggccgaacgtccggtttgccccgctcaagctgcccgactcggcccagatgcgcctgcag
cggatctatccccgcagcacctacaaggtcgccgcagaggtggctctggtgccgcgtccc
aggacggcaccggtgggcggctcgccgctggtcggtcgcgagctgttggactggacgcgc
accgtcgtcgacaccctcgtgccggcctag
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